Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416563
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Entry
139416563 CDS
T10872
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139416563
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Cadherin related
139416563
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Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
FAM176
Laminin_G_2
Toxin_R_bind_N
Cadherin_pro
V_ATPase_I
Cadherin_C_2
EphA2_TM
PFF1_TM
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
139416563
NCBI-ProteinID:
XP_071021430
LinkDB
All DBs
Position
9:complement(53700635..53769003)
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AA seq
984 aa
AA seq
DB search
MQIRRYKHFASVVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTFTKEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPHGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICSYEIVTPDVPFTVDKDGFIKNTEKLNYSKERMYKLTVTAYDCG
KNRASEDVLVKINIKPTCKPGWQGFNKRIEYEPGTGSLALFPSMHLETCEEPITSIQANI
ELETNHIGKGCDRDTYSEKSLHKLCGASAGTVELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPEGVVSTSLKEPFTVSVWMRHGPGAREKETILCNSDKTEMNRHHYSLYVH
NCHLILLLRQDPAETENYKPAEFHWKLDQVCDKEWHHYVLNVEFPSVALFVDGATFEPFL
VTEDYPLHSSKIDMQLTIGACWQDNPGHDKDNETVSEPSTGGNARMSQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVAFNPNQSSLTVEGDDIEAFDKVMQHI
SYLNSRQFPTPGIRHLRVSTTVKCFNEETCILIPEAAGYVMVLQPEEPKISLSGIDHFAR
GAAEFESPEGVTLFPELRIVSTITREVEAETEPEATEGAEGAEDDPTVQETVVSEEIMHN
LDTCEVTALGDELDGEHETLEVDQAQVQQRGLEMTSSNLGLVLTGVNTMANYEQVLHLIR
YKNWHTEALFDRKFKLFCSELNGRYISNDFKVEVSVIHTANPMDHANNAMVQPNFINPVH
HASVDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRSAHQRTMRDTEGG
KENEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEEGEEEDDITSAESESSEDEEA
GEPEDQQGASRQQQLEWDDSTLTY
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcagaaggtataaacattttgcatccgttgtcggactggtcctcggactatta
tgtgcggtggaggcagctaaagttaataagcacaagccatggatcgagacgacgtatcat
ggcatcgtaacagaaaatgacgacaaagtacttctggaccctccacttatcgccctggac
aaagacgccccactgcgctacgcagaaagttttgaggtgaccttcaccaaagaaggtgag
atttgtggcttcaggatccatgggcagaatgttccctttgaggcagtggtcctggacaag
tccacgggtgagggagtcattcgagctaaggacaagctggactgtgaactccagaaggag
cacaccttcaccatccaggcctatgactgtggagagggcccccacggagccaacatgaag
aaatctcacaaggccactgtccacatccaagtgaacgacatcaacgagtattccccagtg
ttcaaggagaagtcctacaaagccacggtcatcgagggtaagaagtatgacagcatcctg
aaggtggaggcagtggatgccgactgctcattccagtttagccagatctgcagctacgag
atcgtcaccccagatgtacccttcactgttgacaaggacggcttcatcaagaacacagag
aagctgaactacagcaaagagcgcatgtacaaactgacggtgactgcctacgactgtggg
aagaaccgcgcctcagaagatgtgctggtcaagatcaacattaagcccacctgcaagccc
ggctggcaaggtttcaacaagaggattgagtacgagcctggcacaggcagtctggccctt
ttccccagcatgcacttagagacctgcgaggagccaatcacctccatccaggccaacatc
gagctggagacaaatcacatcggaaagggctgcgaccgagacacctactctgagaagtcc
ctgcacaagctatgcggcgccagcgctggcacggtggaattactgcctgcaccaagcagc
tctgccaactggacggtgggtctgcccacagacaatgggcatgacagcgaccaggtgttt
gagttcaatggcacgcaggccatcaaggtgcccgagggcgtggtgagcaccagcctgaag
gagcccttcaccgtctcagtgtggatgaggcacggccccggggccagggagaaggagacc
atcctctgtaactcggacaagaccgagatgaacagacaccactactccctctacgtccac
aactgtcacctcatcctgctgctgcgtcaggaccccgcagagacggagaactacaaacca
gcggagttccactggaaactggaccaggtgtgtgacaaagagtggcaccactacgtgctg
aatgtggagttcccctccgtggctctctttgtagacggggccaccttcgagcccttcctg
gtcaccgaagactaccccctgcactcctccaagatcgacatgcagctcactatcggggcc
tgctggcaagacaacccaggacatgacaaagacaatgagacagtatctgagccttccaca
ggcggcaatgctcgcatgtcccagtttttccgggggaatctggccggcctgatgatccga
tcgggaaagctggagaacaagaaggtgatcgactgcctgtatacctgcaaggagggactg
gatgtgcagctgcctgaggaggtggcctcagccgtcaaggtggcattcaaccccaatcag
tcgtcgctgaccgtggaaggcgatgacattgaggctttcgacaaggtcatgcagcatatc
tcctacctgaactcacgccagttccccacccccggcatccgacacctccgcgtctccacc
accgtcaagtgcttcaatgaggagacgtgcatcttgataccggaagcggcgggatacgtg
atggtgctgcagcccgaggagcccaagatcagcctgagtggcatcgaccactttgcccgc
ggcgctgcagagtttgagagccctgagggcgtgactctgttccccgagctgcgcatcgtc
agcaccatcacccgcgaggttgaggctgaaaccgagccagaggccacagagggggcagag
ggggcagaggatgaccccacagttcaagagacggtagtgtcggaggagatcatgcacaac
ctggacacatgtgaggtgacggcgctgggcgatgagctggacggagagcatgagaccttg
gaggtggaccaggcccaggtccagcagcgcggcctggagatgacctcctccaacctgggt
ctcgtcctgacaggcgtcaacaccatggccaactatgagcaggtcctgcacctgattcgc
tacaagaactggcacacagaggctctctttgacaggaagttcaagctgttctgctccgaa
ctcaacggccgatacatcagcaacgacttcaaggtcgaggtcagtgtgatccacacagcc
aaccccatggaccatgctaataatgccatggtgcagcccaatttcatcaacccagtgcac
cacgcctctgtggacctgtccggacacaacctggtcaacgctcaccaggcttcagtggtc
cccagcgccgccaccatcgtcattgtggtgtgtgtcagcttcctggtgttcatgatcatc
ctgggcgtgttccggatccggtcagcccaccagcgcaccatgagggacacagagggcggc
aaggagaatgagatggactgggatgactcggccctcaccatcacagtcaaccccatggag
acttatgaggaccagcacagcagtgaggaggaggaagaagaagaggaggagagcgaggaa
ggtgaggaggaagatgacatcacaagtgctgagtcggagagcagcgaggatgaggaggcc
ggagagccagaggaccagcagggtgccagcagacagcagcagctggagtgggacgactcc
acactcacctactaa
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