Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416579
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Entry
139416579 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase MIB2-like isoform X1
KO
K10645
E3 ubiquitin-protein ligase mind-bomb [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139416579
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139416579
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
139416579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIB_HERC2
SH3_15
Ank_2
Ank
Ank_5
Ank_4
Ank_3
zf-C3HC4_3
ZZ
Ank_KRIT1
Sina_RING
Motif
Other DBs
NCBI-GeneID:
139416579
NCBI-ProteinID:
XP_071021509
LinkDB
All DBs
Position
9:54801976..54893729
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AA seq
1041 aa
AA seq
DB search
MVSCDSAIELFKMFRNGLKIMGITPDLVPEPLVPPVVHTLPSAWVRPALHRPRRRSSSGN
SSGGDPTRPWHSGLAGPRGSMEVGMRVVRGLDWKWGNQDDCDGHVGTVVEIGRQGSTTTP
DKTVVVQWDSGTRTNYRTGYQGSYDLLLYDNAQIGVRHSNIICDSCKKHGIMGMRWKCKV
CFDYDLCTQCYMNNKHDLGHAFERYETAHSQPVCLAPRQNLPRIILKGIFQGVKVVRGPD
WDWGNQDGGEGKVGKVVDIRGWDTESGRSVASVTWSNGTTNVYRMGHKGKVDLKYVSDVQ
GGFYYKDHLPKLGEHAELQRQESAEGHTFNQGDKVKCLLEVDILRQMQEGHGGWNPKMSE
YTCRIGMVHRITDRGDVRVQYSNNIRWTFHPGALTKVNTFGVGELVRVLEDIDSVKRLQA
GHGEWTDSMTPALGQVGKVLKVYADGDLRVAFNGQTWTFNPACLSAQSVEVDANLMTVEN
PNVSGNTVISVLEKLLSQSTDQDNPSRLVIEAAHGSANKVRELVQKYPDKVDIKNQGKTA
LQVAAHQGHMEVVLALLQANSSIEVKDEDGDTALHYTAFGNQAEIARLLLSKGAKVNLLN
NSMCTALHIAVNKGFTDVVRVLSEHSADINLQDSYGDTPLHDAIAKDFRNIIEILVVVPN
IDFTQQNHRGFNLLHHAALKGNKLATEKILARARQLVDVKKEDGFSALHLASLNNHRDVA
EILVKEGRCDVNIRNNRNQTPLQLAVTQGHGDLVQLLVVEGADVNVEDEDGDTAMHVALS
RPQLANATLTPATTSTTTTTQERGEGGPGSSSSSLYCQLSSSGLMGNTELSVGAAIACFL
AQEGANINYANHKGKSPLDLVADTAVLQLIKSFSEKQRLQRLQAITCGTSLSSTSLRRVH
TTPNTMTNLAMPVLPGPSECLICSELALLVLFCPCQHSVACEECAHRMKKCIKCQVTITK
KIRQDQTEVDCSPDSEQHNLLEQLQSRYRQMEERITCPICIDNHIKLVFQCGHASCIDCS
AALKTCPICRQTIRERIQLFV
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcctgtgactctgcaatagagctcttcaagatgttcaggaatgggctgaagatc
atgggaatcacccctgatctggtcccggagcccctggttccacctgtggtgcataccctg
ccctcggcgtgggtccggcctgccctgcacaggccccgtaggcgcagcagcagcggcaac
agcagcggaggcgaccccaccaggccgtggcactcgggcctggcaggccccagaggcagc
atggaggtaggcatgcgtgtggtgcgtggcctggactggaagtgggggaaccaggatgac
tgtgacggccacgtgggcacggtggtggagatcgggcggcagggcagcaccaccacaccc
gacaagacggtggtggtgcagtgggacagtggcacgcgcaccaactaccgcacaggctac
caaggctcctacgacctgctgctctacgacaacgcccagatcggtgtgcgccactccaac
atcatctgtgacagctgcaagaagcatggcatcatggggatgcgctggaaatgtaaggtg
tgctttgactacgacctgtgcacgcagtgttacatgaacaacaagcacgacctgggccac
gcctttgaacgctatgagaccgcccactcccaaccagtgtgcttggccccaaggcagaat
ctcccacggatcatcctcaaaggaatattccagggggtgaaagtggtacgcggacccgac
tgggactggggaaaccaagacggaggagagggtaaggttgggaaggtggtggacatccgt
ggctgggacacagagtccggtcgcagtgtggccagtgtcacctggtccaatggtaccacc
aatgtctaccgaatgggtcacaagggcaaggtagacctcaaatacgtgtctgacgtccag
ggaggcttctactacaaagaccacctaccaaagctcggtgagcacgcagaactgcagagg
caggagagtgcagaaggccacaccttcaaccagggggacaaggtgaaatgtctcctggag
gtggacatcctcagacagatgcaggagggccacggagggtggaaccccaaaatgtcagag
tacacctgcagaatcgggatggtacacagaatcactgaccggggagatgtcagagtccag
tacagcaacaacatccgctggaccttccacccaggggccctaaccaaggtgaacactttt
ggtgtgggcgagctggtgcgagtgctggaagacatagacagcgttaagaggcttcaggct
ggccatggagaatggacagacagcatgacacccgccctggggcaggtgggcaaggtgctg
aaggtgtacgccgacggggacctgcgcgtggccttcaacggccagacgtggacctttaac
ccggcgtgcctctcggcccaatccgtggaggtggacgccaatctcatgacggtggagaac
cccaacgtatccggaaacacagtcatttcagtcctggagaagctgctgtctcagtctaca
gatcaggacaaccccagccggctggtcatcgaggcggcgcatggcagtgccaacaaagtc
cgagagcttgtgcagaaataccctgacaaggtggatataaagaaccagggcaagacggcg
ctgcaggtggcagcccaccagggccacatggaggtggtcctggctctgctgcaagccaac
agctccattgaagtgaaggacgaggacggagacaccgccctgcactacacggccttcggg
aaccaggcggagattgcacggctattgctgagcaaaggggccaaggtgaacctgctaaac
aactccatgtgcacagcgctgcacatagccgtcaacaagggcttcaccgatgtggtgcgt
gtgctgtcggaacactcagccgacatcaacctacaggactcgtacggagacacaccactg
cacgacgccatcgccaaagactttcgtaacatcattgagatcctggttgtggtgcccaac
atagacttcacccagcagaaccaccgcggcttcaacctcctgcaccacgcagccctcaaa
ggcaacaagctggccacggagaagatcttggctcgggcgcgtcagctggtggatgtcaag
aaggaggacggcttctcggctctgcacctggcctccctcaacaaccaccgagacgtggcc
gagatccttgtaaaagagggccgctgtgacgtcaacatccgcaacaaccgcaaccagacg
ccgctgcaactggcggtaacgcagggccacggggacctggtgcagctgctagtggtcgag
ggcgcggacgtcaatgtggaggacgaggatggggacacggccatgcacgtcgccctcagc
cgcccgcagctggccaacgccacgctcacccccgccaccaccagcaccacgaccaccacg
caggagagaggagaggggggtccgggctcgtcatcatcctcgctgtactgtcagctgagc
agctcgggactgatgggtaacacggagctgagcgtgggcgcagccattgcctgtttcctg
gcacaggagggcgccaacatcaactacgctaaccacaagggcaagagcccgctggacctg
gtagctgacacagccgtgctgcagctcatcaagagcttctctgagaagcagcggttgcag
cggctgcaggccatcacgtgcggcacgtcactgagcagcaccagcctgcggcgggtccac
accacgcccaataccatgactaacctggccatgcccgtcctgccggggcccagcgagtgt
ctcatctgctccgagctggcgctgctcgtcctcttctgcccctgccagcacagcgtcgcc
tgcgaagagtgtgctcatcgaatgaagaaatgcatcaaatgccaggtcacgatcaccaag
aaaataagacaagaccagacagaggtggactgcagcccggactcggagcagcacaacctg
ctggagcagctacagtcacgctaccgccagatggaggagcgtatcacctgccccatctgc
atcgacaaccacatcaagctggtctttcagtgcggccacgcctcctgcatcgactgcagc
gccgccctcaagacatgccccatctgcaggcagaccatccgcgagcgcattcagctcttt
gtctga
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