Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416641
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Entry
139416641 CDS
T10872
Name
(RefSeq) neurofascin-like isoform X1
KO
K06757
neurofascin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139416641
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139416641
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
L1 family
139416641
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Bravo_FIGEY
V-set
Ig_5
Ig_DSCAM-DSCAML_C
Ig_6
C2-set_2
Ig_4
V-set_CD47
DUF3792
Motif
Other DBs
NCBI-GeneID:
139416641
NCBI-ProteinID:
XP_071021661
LinkDB
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Position
9:59350966..59379083
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AA seq
1187 aa
AA seq
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MGMLARSTLLLLLWQGLSAIDVPLEIRQPPTIIKQSLKDHVVDPRDNMVVECEAKGTPHP
IFSWRRNGKYFNVARDPQASMRRRSGTLDIYAWADPEAYEGEYQCVATNEYGTAYSNKIN
LRISRAPLWPREVLEPVTVSVGLPLVLDCSPPPGPPKPETYWMSKCSSGRPFNWPHQPHP
PVMLPIKQDRRVSMGVNGDLYFSNVYVNDSATDYCCNARFPYKNIIQQKMPITVRVLTTR
MVSEAAPTFLSPAGRSSSQTVLQGEELLLECIAAGVPTPVITWTKDGQELDTTNMKVKNY
NKLLQIPKAAFEDSGEYTCSATNKIGYLEHTITVRIKAAPFWLEKPSNLVLAPEENARLV
CRSDGIPRPSIRWFINGDTMEDATPVPNREVSGDTITFRSVTVANTGVYQCNASNQYGYL
FANAYINVLHAKPRILRPRTDLVKVIEGRRAWLDCRYFGSPVPDLRWSKYGLGNLEGNRF
KVHSNGTLQIKGTRMDDQGTYVCVVSNVAGRDENEVKLEVKESTKILKRPDNMRVLRGTD
VRLECKAQHDPTVAVTTTWLKNKQFLIIGWRLSLDESTLVITNVNRGDEGNYTCIIKTEM
DKNTASARLVVMDRPDPPTNLQLSDPFERSVRLTWTPGDSNHSPIKENLVQYDDDDWLPF
KWRNLSTYPGNLNSVILQLSPFIIYEFRVIAINDIGMSKPSRSSANFQTGGAPPDAIPKN
IQGVGTWRNNMMISWEALNNREWNGPHLKYLVWWKRRDSREEWKNATTWWCKYYIYDTDT
FTPYEIKVQAVNDFGMGPESPVIIGYSGEDRPTAAPLNLRVSRIEATKVTVHWDLVAHNS
IMGEFKEYKVYFWRDSSQLRWLSVSRAMKSKAFPASRQRLSGVLPGLIPYSNYKMYIVVA
NNRYEGHPSNTIEFSTPEGTPSAPRSFRIQQRHLDMIWVDWDTPAEPNGIVTGYILKYQT
VNATQGEELHVEGFPPNTTSFAVRRYDRYTRYRFTIAAQTRIGVGEWYTEESPHYTTEAY
AREQVDLSTQGWVIGVMCAVALFVLILLVVCFIKRSRGGKYPVRDKKEVTLEPVDDKDQE
GSFDYRSLERISRVTTIPYSARREEETKVGRGQTTVDTMMKRTDSDDSLVDYGDGQEIEF
NEDGSFIGQYTGHKERDDRDTEFSESRSQEAHSPMANSPMSPIYSFA
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggggatgctggccagatccactctattactactgttatggcaaggactgtctgccatt
gacgtcccactggaaatcagacagccccccaccattataaaacagtcgttgaaggatcat
gtcgtggaccccagagacaacatggtcgttgagtgtgaagccaaaggcaccccccaccca
attttctcatggaggcgtaatgggaagtatttcaatgtggcacgggaccctcaggcctcg
atgaggagacgttcggggacgctggacatctatgcctgggctgacccggaggcttatgag
ggggagtaccagtgtgttgccaccaatgagtatggcactgcatactcaaacaagatcaac
ctacgcatctctagggcccctctgtggcccagagaggttttggaaccggtaacggtgagt
gttggtcttcctctggtcctggactgcagccctcctccaggccctcccaaacctgagacc
tattggatgagcaagtgttcatcagggagacctttcaactggcctcaccagccccacccc
ccagtcatgctgcctatcaaacaagaccgtagagtgtctatgggggtgaatggagatctc
tacttctctaatgtctacgtcaatgactctgccactgactactgttgcaacgcgcgcttc
ccctacaaaaacataattcaacagaagatgcctattaccgttagagtccttacaacccgc
atggtgtcagaggccgctcccaccttcctgtctccagccgggaggtccagctcccagact
gtcctgcagggggaggagctgctcctcgagtgcatcgctgctggagttccaacgcctgtc
atcacatggaccaaagatggacaggaactggacacgaccaacatgaaggtgaagaactac
aacaagttactgcagatccccaaggccgcttttgaggactctggtgaatacacgtgcagt
gccacaaacaagattggatacttggaacacaccatcactgtccggatcaaagctgctccg
ttctggttggaaaagcccagtaacctggtgctggccccagaggagaatgcacgcttagtg
tgccgctctgacggcatcccccggcccagtatccgttggttcatcaacggagatacaatg
gaggatgctactccagtcccaaacagggaggtgtccggagacacaattaccttccgttct
gtgactgtggcgaacactggtgtataccagtgcaatgcctctaaccagtatggctacctg
tttgccaatgcttacatcaacgtactgcatgcaaagccacgtatccttaggcctaggact
gacctggtgaaggtcattgagggcagacgcgcctggctagactgccgctattttggctcg
cccgtgcctgatctgcgctggtctaagtatggactgggcaacctggaggggaatcgcttt
aaagtacacagcaacgggacactacagatcaaaggcacccgtatggatgaccaggggaca
tatgtgtgtgttgtcagcaacgtagcaggacgagatgaaaacgaggtcaaactagaagtc
aaagagtccaccaaaattctcaaacgcccagataatatgagagtcctccgggggactgat
gtccggttggagtgtaaggcccaacatgaccccacggtcgccgtcaccaccacctggctg
aagaacaaacagttcctcatcataggctggaggctgtcgctggatgaatcaactctggtc
atcacaaacgtcaatagaggagacgagggcaattacacctgcatcatcaagactgagatg
gacaagaacactgcctccgcccgcctggtggtgatggatcgtccagacccccctacaaac
ttgcagttgtcggacccctttgagcgcagcgtcaggcttacctggacccctggagatagc
aatcacagtcctatcaaagaaaacctggtgcagtatgatgatgacgactggttacctttc
aagtggagaaacctttccacgtaccctggaaacctgaactctgtcattctgcaactgtca
ccattcattatctatgagtttagggtcattgctatcaatgacattggtatgagtaaaccc
agtcgctcgtcagccaacttccagactggtggagcacctccagacgccatccctaaaaac
attcagggagtgggaacatggagaaacaacatgatgatcagctgggaggcattaaacaac
agagagtggaacggtccccacctaaagtacttggtgtggtggaaacggagggattccagg
gaggagtggaagaacgctaccacttggtggtgtaaatactacatctacgacacagacacc
ttcacaccatacgagataaaggtccaggctgtcaatgactttgggatgggcccagagtcc
cctgtcatcataggctactctggagaagaccgtcccactgctgcccccctcaacctgcgt
gtgtccaggatagaggccactaaggtcaccgtgcactgggacctcgtggctcacaacagc
atcatgggagaatttaaggaatacaaggtctacttctggcgagacagtagccagctgagg
tggctgagtgtgagcagggccatgaagtctaaagcctttccagccagcaggcagcgtctc
tctggtgtcctgccgggactcatcccttacagcaactacaagatgtacatagtggtggcc
aacaaccgatacgagggacatcccagtaacaccatagagttctccactccagagggaaca
ccctctgctccaagatccttcagaatccagcagagacatttggacatgatctgggtggac
tgggacactcctgcagagcccaatggcatcgtcaccggatacatactcaaatatcagaca
gtgaacgcaactcagggggaagaattgcacgttgagggatttcccccaaacaccaccagt
tttgctgttcgcagatatgatcgctacacccgctatagattcaccatagcagcacagact
agaattggggtaggagagtggtacacagaggaatcaccccattatacaactgaagcttat
gctcgggagcaggtggacctctccactcagggctgggtaattggtgtgatgtgtgctgtg
gctctattcgtgctcatcctgctggtcgtctgctttatcaaaaggagccgagggggcaaa
tacccagtacgagacaagaaagaagtgacattggagccagtggatgacaaagatcaggag
ggatcatttgactatcggtctctggaaaggataagtcgtgtcaccaccattccctactct
gcccgacgggaggaagagactaaagttggcaggggccagacgacagtagacaccatgatg
aaacggacagatagtgacgacagtctggtggactatggtgatggacaggagattgagttc
aacgaggacggctccttcattggccagtacactggacacaaggagagggatgacagagac
acagagttcagtgagagcaggagccaggaagcccactccccgatggccaactcccccatg
agccccatctattcatttgcataa
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