Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416709
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Entry
139416709 CDS
T10872
Name
(RefSeq) POU domain, class 6, transcription factor 1-like isoform X1
KO
K09368
POU domain transcription factor, class 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139416709
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
139416709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
139416709
NCBI-ProteinID:
XP_071021792
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All DBs
Position
9:62336263..62344445
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AA seq
678 aa
AA seq
DB search
MDPQDLPATDAPLTVNEQPLGSCTLKYPAKDNQVIVMSGHETIRVLEVEVDQASLPSSVP
DGRTDSGGEDGGNQATEEPEAGMQDSQRPPHNAGGVGEPFVGYRYVLEDQVVSVESADSG
VQTLAQTAVPISVSLSQSQTTMPITVQSLQGLQGCQQVLTQEGLATLMTGMMAQTGSLAQ
PLLIPISMAGSMGGQGGLAVLTFPTSNVATLPGISGASQAGSLLKLPFAGLQGLQGLQGL
QGLQTATVLNSVQPQQTVFQPQTASLQQVQAAMQQAQQTVFQPQTASLQQVQAAMQQAQQ
NSQVTAAQLGQAMPAVSQPSVSVATLQSAGLSINPAIISAASLGAQPQFISALTSTPIFT
SAMSGITSQIITNAQGQVIGTIPLMLNPASLTGGAATQTLNLQGLQGLQGLQVQTVQPQL
VLNTQGQIIATIGNGPATVPTSAAVMPKPSAPVTFSKPSTQAQVTTVTQSPVVIAPQPSA
MKTVTPISSSFPITCGDTPTVSQLVSKPQQGGTDEEGINLEEIREFAKNFKIRRLSLGLT
QTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLERWLAEAELWNQKGQQNLM
EFVGGEPSKKRKRRTSFTPQAIEVLNTYFEKNALPTGQEITEIAKELNYDREVVRVWFCN
RRQTLKNTSKINAFQVQL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcaggatctccctgctactgatgcacccctcactgtcaatgaacagccatta
ggttcctgcactttgaaataccctgccaaagacaaccaggtgatagtgatgtctggtcat
gagacgatccgagtcctggaagtggaggtagatcaagcctctcttccatcctcagtgcct
gatgggaggactgattcggggggtgaagatgggggtaatcaggccacggaggaacctgag
gcaggcatgcaggacagccagagaccaccccacaacgctgggggagtaggtgagcccttt
gtaggataccgatatgtgctggaggaccaggtggtgtctgtggagtctgcagactctggt
gtccagactctagcacagactgcagttcccatcagcgtctccctgtcgcagtcacagacc
accatgcccatcactgtgcagagcttacagggcttgcagggctgtcaacaggttctgacc
caggagggtctggccactctgatgaccgggatgatggcccagacaggctccctggcccag
cccctgctcatccccatcagcatggcagggtccatggggggccaaggaggcctcgctgtc
ctcaccttccccaccagcaacgtagccacactccctggcatttcaggtgccagccaggcc
ggaagcctcctcaaactaccctttgctggcttgcaaggcttacaaggattgcaaggctta
caagggctgcaaacagccactgtgctaaattctgtccagccccagcagacagtcttccag
cctcagacagcatcactacagcaggtccaggcagctatgcagcaggctcagcagacagtc
ttccagcctcagacagcatcactacagcaggtccaggcagctatgcagcaggctcagcag
aactcacaggtgactgcagcccaactaggccaggccatgccagccgtctctcagcccagc
gtgtctgtggcaacactccagtctgcaggcctctccatcaatcctgccattatcagtgct
gcgtctttaggggctcagcctcagttcatcagcgcccttacttccactcccatcttcacc
agtgccatgtccggaatcaccagccagatcatcaccaacgcacagggacaggtgattgga
accatccccctgatgctgaaccctgcatcactgactggaggggctgctactcagactctg
aatctccagggcctccagggtctgcaaggcctgcaggtgcagacagtccagccacagctg
gttctgaacacccagggccagatcattgccaccatagggaatggacctgctacagtcccc
acatctgcagctgtaatgcctaagcctagtgctcctgtgacattctccaagcccagcact
caggctcaggtaacaacagttacacagtcacctgtggtcatcgccccacaaccgtctgca
atgaagacagtcactccaatctcctcctcattccctataacctgtggagacacacccact
gtcagccagctcgtcagcaagccacagcaagggggcacagatgaggagggcattaatctg
gaagagattcgagagtttgccaagaacttcaagatccgccggctatccctggggctgacg
cagacacaagtgggacaggccctcacggctacagagggtccggcctacagtcagtctgct
atctgcaggtttgagaagctggacattacacctaagagtgctcagaagctgaagcctgtg
ctggagcgatggctggccgaagctgagttgtggaatcagaagggtcagcagaatctaatg
gagtttgtgggtggtgagccgtccaagaaacgaaagcgtcgcaccagctttaccccgcag
gctatcgaagtgctcaacacctactttgagaagaatgccctgcccacgggccaggagatt
acggaaattgctaaggagctcaactacgaccgtgaggttgtccgcgtatggttctgcaac
aggcggcagacactgaagaacaccagcaagatcaatgcgtttcaggttcagctgtaa
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