Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416766
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Entry
139416766 CDS
T10872
Name
(RefSeq) slit homolog 1 protein-like
KO
K06260
platelet glycoprotein V
K28877
leucine-rich repeat-containing protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139416766
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139416766
04090 CD molecules [BR:
ocla04090
]
139416766
Transporters [BR:
ocla02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
139416766
CD molecules [BR:
ocla04090
]
Proteins
139416766
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
LRR_1
LRR_9
LRR_LRWD1
LRRNT
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
139416766
NCBI-ProteinID:
XP_071025536
LinkDB
All DBs
Position
1:complement(10904467..10922621)
Genome browser
AA seq
1482 aa
AA seq
DB search
MDLSINLYPFLLLFSISGVLGVCPDVCQCRDSKILCQGRSITEFPSSVPGSTTTFYISNT
NITALKPHDLATFAEALGIFVVKDTGIREVFPGTFDLSHNLGALGFTGTELNDLPEALFL
NLVKLESLTLSGNKLLVLRPAWLNSLTALRTLDISKNLITSVPEEAFRSVTELQHLSLAR
NNISQLSRDTFRGLRNLKSLRLNRNTLREIPAGALDDLVSLEEISLQDNDITHLSANLFS
QLQSLQKLYLSSNRLTSLPQGIFLNLPNLAQISLYENELQSLSPGVFGPMALKELWLYDN
RLTRLEGKTFSNLTQLRLLVLSRNQISSVSPRAFSGLAELGEVSLHTNLLTSLREGTFQG
LPKLVNISLKHNYISSLPAGLLQGQTQLGQLVLHNNSLPNLPSELLSTLTVAKEVLLADN
PWRCDQDIVPLRDWLTRHPTKTNLSAVVCLTPSALRGYSIANLTNDELMQDTTTAIPDIA
PTEKRRKPHTPPSKTSTPSPAAEATPTQEQGEDTGSGRGNGEGVSRNTQILITAVVCTAV
ITSLIVCCVCWRRNKRGSRNLGRRNKNNSTVLLASVDYKPQDERKSSGKMTRGHTFICLL
PLLIGYSSQSCQKDCSKENQDVYGLDVTQIPVSLKAGVTEVFFVDSNITVIPKGAFATNP
KLEKVAFINTPTVSVENGAFEGLVNLKHIEISNTPLTSLSVDVFQDMHNLEELLLKHNKI
RSLEKGLFDGLKKLRELQLHINKIDTIEEGTFDDLENLRTLHLAKNDLSSVSSALFSKLH
KLEVLRLYENQLTAIPDNILENLSNLKEIALQSNNITSISANLFPHKDKLNKILLDNNML
TELPPEIFVGFPLLKALTLNGNKLASLPPVLFGEMPKLTELSLSRNSLTSLPQGVFSPLK
KLRKLDLSNNQLLTVSEESFEGPEKLTELNLQYNHIKSLKANTFEKLTSLTTLRLAHNIL
GTLPEGVFDPLPKLSKVYLNNNTWHCDCRLVPLFNWMKANPGKIKSTTPEICNQPEDLKG
QEIMSLKEDQLICPVSPLTTIPSLTTTTTLAPTTTTTLAPTTTTTLAPTTTTTLAPTTTT
TIAPTTTTTTLAPTTTTTIAPTTTTTLAPTTTTTLAPTTTTTLAPTTTTTLAPTTTTTLA
PTTTTTLAPTTTTTIAPTTTTTLAPTTTTTIAPITTTTIAPTTTTTIAPTTTTTLAPTTT
TTLAPTTTTTLAPTTTTTLDPTTATTLDPTTTTTLAPTTTTTLAPTTTTTLAPTTTTILA
TTLAPTTTTTLAPTTTTTLAPTTTTTLAPTTTTTLAPTTTTTLAPTTTTTLAPTTTTTLA
PTTTTTLAPTTTTTLAPTTTTTTLATPTTTTTVSTPIPTTTLFTTIPTTTITRTTMRDST
DPLTTPRIFSCPNIAPSRRPSSSYYTRQAWSKTSQCRAQMISYTAMLVVEIGCTLVLAKF
TLSLYSLLQRRERLYTRVNLTHFSYRKEITLRPVKVTETVGL
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atggacctgtcaatcaatctctacccctttctcctcctcttttccatcagtggagttctt
ggagtgtgcccagatgtatgccagtgcagagacagcaaaatcctctgccaaggcaggtca
atcacagagttcccgtcctcagtgcctggctctaccaccaccttctacatctccaacacc
aacattaccgctctcaaaccccatgacttggctacttttgccgaggcccttggcatcttt
gtggtcaaagacactgggatcagagaggtgttccctggcacctttgacctcagtcataac
ctgggtgccctgggcttcaccggcactgagctgaatgacctgcctgaggccctgtttcta
aatctggtgaagctggaatctctgactctgagtggcaacaagctcctggtgctccgccct
gcctggctcaactccctcactgctcttaggaccctggacattagcaagaacctcatcacg
tctgtacctgaggaggcctttcgctctgtcactgagctgcagcatctctccctagccagg
aataacatcagtcagctttcaagggacaccttcaggggcctgagaaatctcaaatccctg
cgtctgaaccggaacactctcagggagatccctgccggagcgttggatgacctggtgagc
ctggaggagatttctttgcaggataacgacatcactcatctctccgctaacctgttctcc
cagctgcagagcctgcagaagctttatctctccagcaaccggctgacttccctcccacag
gggattttcctcaacctcccaaacttggcccagatctccctgtatgagaatgagctccag
agtctgtccccaggggtttttgggcccatggctctgaaggagctatggctgtatgacaac
cggctgacacgcctggagggcaaaaccttcagcaacctgacccagctacgtctgctggtg
ctgagccggaaccagatcagctctgtgtcccccagggccttcagtggactggccgagctg
ggggaagtgtcgctgcacaccaacctcctcaccagcctgcgggaagggaccttccagggg
ctgcccaagctggtcaacatctccctcaagcacaactacatcagctccctccccgcaggg
cttctccagggccagacacaacttggccagctggtcctccacaacaactccctacccaac
ctgccctcagagctcctcagcaccctaacagtggccaaggaggtgttgctggctgacaac
ccctggaggtgcgaccaggatattgtgccactgcgcgactggctgacacggcaccccacc
aagaccaacctcagtgctgtggtgtgcctcacgccctctgccctgagaggttacagcata
gccaatctgaccaacgacgagctgatgcaggatactacgacagccatccctgatatcgcc
cccacagagaagaggaggaaaccccacacccccccttccaagacaagcaccccctctcct
gctgcagaggccacacccacccaggagcagggggaggacaccggtagtgggcgggggaac
ggagagggcgtgtccaggaacacgcagatccttatcaccgcggtagtctgcaccgctgtc
atcaccagtctcatcgtctgctgcgtctgttggaggaggaacaagagaggcagccgcaat
cttggccgcaggaacaaaaacaactcaactgtcttactcgcctctgtcgattataagcct
caagacgagaggaaatcatcaggaaaaatgactagaggacacaccttcatctgtcttctg
cctttactgattgggtattcatctcagtcctgtcagaaggactgttccaaagaaaaccag
gatgtttatggattggacgtgacacagatcccagtaagtctgaaagcaggtgtcacagag
gtcttctttgtggacagtaacatcactgtcatcccaaagggggccttcgccaccaacccg
aagctggaaaaggtagcattcatcaacacccccaccgtgtccgtagagaacggtgctttc
gagggattggtcaacctcaagcatattgagatctccaataccccactaacatccttgtct
gtagatgtcttccaagacatgcacaacctggaagaacttctgctgaaacacaacaagatc
cgtagtctggagaaaggattgtttgatggtcttaagaaactgagagaactccaattgcac
ataaacaagattgacacgattgaggaggggacatttgatgacctagaaaaccttcggacc
ctccatctggccaaaaacgacctcagttctgtgtcctccgccctgttctcgaagctgcac
aaactggaggtactgaggctctatgagaaccaacttaccgccattcctgacaatatatta
gaaaatctatccaatttaaaggagatcgctctacagagtaacaacatcacttcaatatca
gcaaatttgttcccacataaagacaaattaaacaagatacttttggacaataacatgttg
actgaattgcctccagaaatatttgtgggctttcctctgcttaaagcattgacactaaat
ggaaataaacttgcaagtctacctcctgtcctctttggagagatgcccaaactgactgag
ttgagtctcagtcgaaacagtcttaccagccttcctcagggagtatttagtcctcttaag
aaactcaggaagttggatctgtctaacaaccaattgttaaccgtgtctgaagagtctttt
gagggccctgagaagctaacagaactcaatcttcaatacaaccacatcaaatcattgaaa
gcaaacacctttgaaaagctgacatcactaaccacccttagactggctcataatatcctg
gggacacttccagagggtgtatttgaccccttaccaaaactcagcaaagtctatttaaac
aacaacacttggcattgtgactgcaggttggtccccctcttcaattggatgaaggcaaac
cctggcaagatcaagtctacgactcctgagatctgtaaccagccggaggatttaaaggga
caagaaatcatgtctctcaaagaggaccagctcatatgtcctgtatctcctctgaccacc
atcccttcactcaccacaaccaccaccttagcccctaccacaaccaccactttagcccct
accacaaccaccaccttagcccctaccacaaccaccactttagcccctaccacaaccacc
accatagcccctaccaccaccaccaccaccttagcccctaccacaaccaccaccatagcc
cctaccacaaccaccaccttagcccctaccacaaccaccaccttagcccctaccacaacc
accactttagcccctaccacaaccaccaccttagcccctaccacaaccaccactttagcc
cctaccacaaccaccaccttagcccctaccacaaccaccaccatagcccctaccaccacc
accaccttagcccctaccacaaccaccaccatagcccctatcacaaccaccaccatagcc
cctaccacaaccaccaccatagcccctaccacaaccaccaccttagcccctaccacaacc
accactttagcccctaccacaaccaccactttagcccctaccacaaccaccaccttagac
cctaccacagccaccaccttagaccctaccacaaccaccaccttagcccctaccacaacc
accaccttagcccctaccacaaccaccaccttagcccctaccacaaccaccatcttagcc
accaccttagcccctaccacaaccaccaccttagcccctaccacaaccaccaccttagcc
cctaccacaaccaccaccttagcccctaccacaaccaccactttagcccctaccacaacc
accactttagcccctaccacaaccaccaccttagcccctaccacaaccaccaccttagcc
cctaccacaaccaccactttagcccctaccacaaccaccaccttagcccctaccacaact
acaaccaccttagccacacccacaaccacaaccactgtctcaaccccaatacccaccacc
acactttttaccactatcccaacaaccaccatcacaagaaccaccatgagagattcaaca
gatccactgaccacgcccaggatcttcagctgtcccaacatagcaccttctcgtcgcccg
tcctcctcctactacacccgccaggcctggagcaagacctcgcagtgcagggcccagatg
atatcctacacagccatgctggtggtggagataggctgcaccctggtgctggctaagttc
accctgtctctgtacagcttgctccagcgcagggagaggctgtacacacgggtcaacctg
actcacttttcctacaggaaggagatcacgctgaggccagtcaaggtgacagagactgtg
ggtctgtga
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integrated database retrieval system
