Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416874
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Entry
139416874 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
ocla04137
Mitophagy - animal
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139416874
04120 Ubiquitin mediated proteolysis
139416874
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
139416874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139416874
04121 Ubiquitin system [BR:
ocla04121
]
139416874
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139416874
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
139416874
Membrane trafficking [BR:
ocla04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
139416874
Aggrephagy
Other aggrephagy associated proteins
139416874
Xenophagy
Other xenophagy associated proteins
139416874
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
139416874
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
139416874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
139416874
NCBI-ProteinID:
XP_071022132
LinkDB
All DBs
Position
1:complement(64850332..64952086)
Genome browser
AA seq
487 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEEGASIAVLKEKVGRLQGVQPEQLRVIFAGRELLSDCTLQGCD
LPEQSTVHVVLPPPGSGRCSDLALQHRLGRGVDSLTRLDLTASRLPTTSTGLAVILETDD
EQRAREEPEHTEPRPYSSFYVYCKSVCRAIQPGKLRVRCRACKQGTLTLSRDNATTVSVG
LSMCEVGGGLLCGDVCDVAQGPSCWDDVLLPERIHGVCQSEGCLGRVAEFYLKCAAHPTS
DDDTSVALDLVMPNVRDVPCIACTDIMSPVLVSQCPDRHVICLDCFHMYCVTRLNERQFI
HHPDVGYSLPCAAGCPDSLITELHHFRALGDEQYERYQQYAAEECLLQMGGVLCPAPGCG
AGLLPEEDKRMIQCLLSNGLGCGFVFCRDCKEGFHEGECHVRSSPVSGGALQGYVVDEEA
ALQARWEQASQETIDETTRPCPHCKVPVEKSGGCMHMVCPRAQCKFEWCWICRVEWNREC
MGNHWFG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgtatgtaaggtttaactccagccatggcttcccagtggagctagaggagggg
gccagcatcgcagtgctgaaggagaaggtggggaggctgcagggggtacagccggagcag
ctgagagtcatctttgctggcagagagctgctcagcgattgcaccctccagggctgtgac
ctcccagagcagagtaccgtgcacgtggtgctgcctcccccggggtcgggccggtgctct
gacctggccctgcagcaccgtctgggtcgaggggtggacagcctcacccgcctggacctc
accgcctcccgcctgcccactacctctaccggcctggctgtcatactggaaactgatgac
gagcagagagccagggaagagcctgaacacacagagcccagaccttacagcagcttctat
gtgtactgcaagagtgtgtgccgggccatccagccggggaagctacgcgtgcgctgccga
gcctgcaagcagggaaccctcaccttgagccgggataatgcaactactgtctctgttgga
ctgtctatgtgtgaggttgggggtggtcttctctgtggagatgtttgtgatgtggctcag
ggcccgtcatgttgggacgatgtcctcctcccagagcgtatccatggcgtctgtcaatca
gagggttgccttggcagagtagcggagttttacctgaagtgtgctgcccaccccacctct
gatgatgacacgtctgtggccctggacctcgtcatgcccaatgtgcgggatgtcccatgc
attgcctgcacagatatcatgagtccagtgttggtgtcccagtgtccagaccgccatgtc
atttgtctagactgcttccacatgtactgtgtgacccgcctcaacgagcgacaattcatc
caccacccagatgtcggctactcacttccatgtgcagctggctgtccagactctctcata
acggagttgcatcacttccgagccctaggtgatgaacagtatgagcggtaccagcagtat
gcagccgaggagtgtctcctccagatgggaggagtgttgtgtccagcccctggatgtgga
gcaggcctgctgcctgaggaggacaagaggatgatccagtgtctgctcagcaacgggttg
ggatgcgggtttgtgttctgccgtgactgtaaggaaggattccacgagggggaatgtcat
gtgaggtcatcacctgtctcaggaggagccctgcagggttatgtagtggatgaggaggca
gctcttcaggctcggtgggagcaggcctcgcaggagactatagacgagaccacccgtcca
tgtccacattgcaaggtcccagtggagaagagtggtggctgtatgcacatggtgtgtccc
cgtgcccagtgtaagtttgagtggtgctggatctgtcgtgtggagtggaacagggagtgt
atgggcaaccactggtttggctga
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