Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416875
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Entry
139416875 CDS
T10872
Name
(RefSeq) integrin beta-7-like isoform X1
KO
K06590
integrin beta 7
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04514
Cell adhesion molecules
ocla04672
Intestinal immune network for IgA production
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139416875
04514 Cell adhesion molecules
139416875
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139416875
09142 Cell motility
04820 Cytoskeleton in muscle cells
139416875
04810 Regulation of actin cytoskeleton
139416875
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
139416875
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139416875
04515 Cell adhesion molecules [BR:
ocla04515
]
139416875
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139416875
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin beta subunits
139416875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
EGF_2
Integrin_b_cyt
EGF_Teneurin
I-EGF_1
EGF_integrin
EGF_TEN
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
139416875
NCBI-ProteinID:
XP_071022129
LinkDB
All DBs
Position
9:complement(70175598..70189661)
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AA seq
773 aa
AA seq
DB search
MRKVWLAVVVLLIHFSELRGSMGLDGRCLSKPTCTECLRSLGCAWCKQKDFLAQGEPDER
RCDREEALRKRHCSDGQVLNPQPAIRSRAEEPMGNGVQLEPQNLHLKLRVGMPQSFEVRF
RRAEVYPIDLYYLMDLSFSMKDDLKNIRNLGPEVATAMKNITSALRIGFGSFVDKVAVPY
VSTVEAKLANPCIEGYKNPCQPAFSFKHVLKLTEDVEEFERKVSKQSISSNLDNPESGFD
AIMQVAVCQDDIGWGNATRILVYTSDDIFHLAGDGKLAGIYQPNDGKCHLNSNGLYNKDT
VYDYPSVGHLSQVLSANNIRLIFAVTDQHIQNYEALSEMIPQSVVGLLEDDSSNVVQLIS
EACNNLLSSILLEHRDVPPGLGVSYNSHCGDDRLAQGQDRGECSDVRTNQQVNFTVTVTS
SSCLSKTESFIIKVQGINEELRVTVETLCDCDCQDSEEQSSQCHGNGTFHCGICSCDSGH
TGQRCECETQPDKDTSLASETLCSSAQTNSTGTPLCSGHGSCVCGQCICWGQHRGQHCQC
DDISCNRHNNMICGGNGRCDCGNCECFHNYTGPACECSTLTDQCQTSNDGICSHRGQCEC
NECHCHPGFFGSHCTKPLAPCDTYRACVACMLHESAINMCHHPCGSAKPIRINGTQSFTC
QDDPVRFNVELLINTGDIFVYYTDTPRGIDPWIINMGKAVVGIVLLGVIMIIIYRLMLEV
SYQRERRSFLKDKENICWEDTQNPLFQEAKTTFTNPMQVLEPDADCATSTFGK
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaggtgtggctggctgtggtggttcttctgatacacttcagtgagctgagagga
tctatgggcctggatggaagatgcctgtctaagcccacctgcactgagtgtctgagaagc
cttggctgtgcctggtgtaaacagaaggatttcctggcgcaaggggagccagacgagcgt
cgctgtgacagggaggaggcactgagaaagagacactgctctgacggacaggtcctgaac
ccccagcctgcaatacggagcagggcagaggagccaatggggaacggggtccagctagag
ccacagaacctccaccttaagctaagagttggcatgccccagtcatttgaggtgaggttc
aggcgtgcagaggtttatcccatagacctgtactacctgatggacctgtctttctccatg
aaagatgacctgaagaacattaggaacctgggaccggaggtggccactgccatgaagaac
atcaccagtgctctcaggataggctttggttcctttgtggataaggtggcggtaccctac
gtcagtacagtggaggccaaactggccaacccatgcattgaggggtacaagaacccctgc
cagcctgccttcagcttcaaacatgtactgaagctcactgaggatgttgaagagtttgag
agaaaggtgagcaagcagagcatctccagtaacctagacaacccagagtcaggctttgac
gccatcatgcaggtggctgtctgtcaggatgacattggctggggtaatgcaactcgtatc
ctggtctacacctcagacgatatcttccacctggcaggtgatgggaagcttgctgggatc
taccaacctaacgacgggaaatgccacctgaatagcaatgggctctataataaggacacc
gtttatgactatccctcagttggacacctatctcaggtcctatcagccaataacatcagg
ctgatctttgcagtgacagaccagcatattcaaaactatgaggcactcagtgagatgatc
ccccagtcggtggtgggcctcctggaggatgactccagcaacgttgttcagctcatctct
gaggcctgcaacaacctattgtcctccatcctcctggagcaccgtgacgtcccaccaggc
ctgggggtctcctacaactcccactgtggtgatgacaggctagctcaggggcaggacaga
ggggagtgcagtgatgtcagaaccaatcaacaggtcaatttcacagttactgtgaccagc
tcgagctgtctgtccaagacagagtctttcatcatcaaagtgcagggtatcaatgaagag
ctgagggttaccgtggagacgctgtgtgactgtgactgtcaggactccgaggaacagtca
tcccagtgtcatggcaatggaacattccactgtggtatctgtagctgtgattcaggacac
acaggccagcgttgtgagtgtgaaacacagccggacaaagacaccagtctggcctcagag
accctgtgttcatctgcacagacaaacagcacaggcacaccactgtgcagcggccatggg
agctgtgtgtgtggccaatgtatctgctggggccaacacaggggccaacactgccagtgt
gacgacattagctgtaaccgtcacaacaacatgatctgtggcggtaatgggaggtgtgac
tgtggtaactgtgagtgtttccacaactacacaggccctgcatgtgaatgctctaccctc
acagatcagtgccagaccagtaatgatggaatctgctctcaccgaggacagtgtgaatgt
aatgaatgccattgtcaccctggtttctttggcagccactgcaccaagcccctggcacca
tgtgacacataccgggcctgtgttgcttgcatgttacatgagtcagccataaacatgtgt
caccatccctgtggctctgccaagcctatccgcatcaatgggactcaatcattcacctgt
caggatgatcctgtacgttttaatgtggaactcctcataaatactggtgacatctttgtc
tactacacagatactccaagagggattgacccatggattataaacatggggaaggcagtg
gtaggaatcgttttactgggtgtcatcatgataataatttaccggctgatgttagaagtg
tcctaccagcgggagcgtagaagtttcctgaaggataaggaaaatatctgctgggaagac
actcaaaatccactgttccaagaggccaagacaacattcaccaaccccatgcaagtgttg
gagccagatgcagattgtgctacatcaacctttggaaaataa
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