Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139416963
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Entry
139416963 CDS
T10872
Name
(RefSeq) host cell factor 1b isoform X1
KO
K14966
host cell factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03083
Polycomb repressive complex
ocla04980
Cobalamin transport and metabolism
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
139416963
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
139416963
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139416963
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139416963
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139416963
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139416963
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139416963
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
139416963
HMT complexes
COMPASS/SET1 complex
139416963
MLL-HCF complex
139416963
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
139416963
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
139416963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_HCF
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_FBX42
Beta-prop_ATRN-LZTR1
Kelch_1
fn3
Motif
Other DBs
NCBI-GeneID:
139416963
NCBI-ProteinID:
XP_071022278
LinkDB
All DBs
Position
9:complement(78349219..78433096)
Genome browser
AA seq
2005 aa
AA seq
DB search
MTSGTSGSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNTA
TNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKP
KSPKNGPPPCPRLGHSFSLVGNKCFLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSVV
GWDIPITYGVLPPPRESHTAVVYTEKTSSKSRLVIYGGMSGCRLGDLWTLDIDTLTWNKP
SINGTAPLPRSLHSATTITNKMFVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSMA
WESVLMDSLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLETEKPR
PPSRVQLVRANTSSLEVSWGAVPTADTYLLQLQKYDIPPASAATTPGVSPATSLPVNSPK
SPVTASAASPQGLPLQGITLVPSPTTTMPGSPLAAANARGPAILKVSAPHSTTGTSIVTV
RQANQGGKSPVTVTSLPAGVRMVVPAQGAQGTPMGSSPQMSGMAALAAAAAATQKIPPST
ATMQLPAGATMVKTVAMSPGSQTVKVASPVMVSNPATRMLKTAAAQVGTSGVVTPGTPSR
PIITVHKSGTVTVAQQHQVVTTVVGGVTKTITLVKSPLTMGGGGTLLTAANQGQNKVMSG
KDVQHWLSNLSNLGKVMSVVQTKPGQTGAVTGQAGSSLQHIIQTKGPLPAGTILKLVTSA
DGKPTTIITTSQAGTAGGKPTILSYSGMPTTTKPGTHIIKTIPMSAIGQAGVTGSGMKSP
ITIITTKMMTPGTGTPGKIISAMPRAGAGQQGLTQVVLKGAPGQPGTILRTVPMGGVRLV
SPVTVSGVKPNVTTLVVKGTTGVTTFGTVTGTVSSSLAGGSVATATPITTLGTMTTLPGQ
VTVSAAQAGAQPTQVTLITTPSGVDAQPVHDLPVSILSSPTSADPSSTQPEAGDPGTVTL
VCSNPPCETHETGTTNTATTASANMTGNGGVERVCSNPPCETHETGTTNTQTTASSNMGQ
VQQVCTNPPSETHDTGTTNTQTTASCNMGSNQQQQGSSVTNNTSGSDPPSSPPPSSSGDL
SPSSLSGTSSVPGVLRPETLRTGTTYTSTTARSNMGSDKMGMTLSSSSSDNQSKSSSGGG
GGGGGGSPLTSPVCSSPPCETHQTGPTEAGAEGRSATQVCSNPPCETHETGTTTTSTQAN
SSMGIGQTTGTVQRVCSNPPCETRETGTTNTPSQTTSNLTGTGTGTGTGTLTGTGTGTGT
VQRVCSNPPCETHETGTTNTPSQTTSNLTGTGTGTGTVQRVCSNPPCETHETGTTNTPSQ
TTSNLTGTGTGTGTGTGTVQRVCSNPPCETHETGTTNTATTAQPGDSTQGDNGTTEAPSS
SSVTTESSAVVAAGRAVTTVTQSTPTPGPSVPEISSMSGSSEAMVAACIEGEEAMQTDCL
PEGTVRVVTLEEAAAAGIQVHVEGMEEQNQGEQEGLPAELMSEGDAGGQQTLMVTGLTPE
ELAVTAAAEQAAQHAATEEANAQAMAIQAVLQAAQHAVMNEGDSGQEGQHQTTTIPIVLT
QAELAALVHQQQQLQEAQALAQAAAAAAAAAQHNQPTEGLAPADSLNDPASESNGQELAA
AVTQAVARLAPNCTMVVTTPAKTQPMMVATPAKTQPMMVATPAKTQPMMVATPAKTQPMM
VATPAKTQPMMVATPAKTQPMMVATPAKTQPMMVATPAKTQPMMVATPAKTQPMMVASPA
KMQAAATLAEVANGIESAAGRQGAPPAVAKAPVKKDNQWFDVGIVKVTNTVVTHYYLPAD
DQATVDDDSGAIPDYSQMKKVDLQPGTAYKFRVAGINTCGRGNFSEVSAFKTCLPGFPGA
PCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSAQSGEQAKPTTTTTPAQLAFMR
VFCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQEMGKDGVAA
KPTAKRPGSSPDMKAAGPKKARSDQ
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atgacatctgggacctctggctcagttctgcagccacggtggaagcgggtgttgggttgg
tccggccctgtccctcggccccgacacggacatcgtgcagttgcaattaaagaattgatg
gtcgttttcgggggtggcaatgaaggaattgtggatgaactgcatgtgtataacacagcc
accaatcagtggttcattcctgctgtccgtggcgacatcccgcctggctgtgctgcgtat
gggttcgtgtgcgacggcaccaggctgctggtgttcggagggatggtggagtatggcaaa
tacagcaacgatctgtatgaactgcaggccagtcgctgggagtggaagcgtctgaagccc
aagtctcctaagaacggccctcctccctgtccccgcctgggacacagcttctccctggta
gggaacaaatgcttcctgttcggaggactggctaacgacagtgaggaccccaagaacaac
atccccagatacctgaacgatctgtatacgttggagctgcgtgccggctctagtgtggtg
ggctgggacatccccatcacctacggggtgttgcccccgcccagagagagccacaccgcc
gtcgtctacacagagaagacctctagcaagtcccgtctggtcatctatgggggtatgagc
ggctgtcgactgggggatttgtggacactagatatagacaccctgacatggaataaaccg
tccatcaacgggacagctcctcttccccgcagtctccactctgccacaaccatcaccaac
aagatgttcgtgttcggaggctgggttcccctggtgatggatgacgtcaaagtagcgaca
cacgagaaggagtggaagtgcaccaacacactggcctgtctcaacctagactcgatggcg
tgggagtcggtgctgatggattctctagaagataacatccccagggccagggccggtcac
tgctccgtggccatcaactcgcgcctctacgtctggagcggacgggacggataccgcaag
gcctggaacaaccaggtgtgctgtaaggacctctggtacctggagacagagaagccccgc
cccccgtcacgggtgcagctggtgagggccaacaccagtagcctggaggtgagctggggg
gcggtacctactgcagacacctacctgttacagctgcagaagtacgatatcccccccgcc
tcggccgccaccacgccaggcgtcagccccgcgacgtcactaccggtcaactcccccaag
agccctgtcacagcctctgcagcgtccccccagggcctgcctctccagggcataacgctg
gtcccctcccccaccaccacaatgcctgggagtccactggctgctgcgaatgcacgcggg
ccagctatcctgaaggtgtctgctccccattccaccacaggcacctccatcgtcacggtg
aggcaggccaaccagggcgggaaatctcccgtaacggtgacgtcacttcctgccggggtc
cgcatggtggtgccggcccagggtgcacagggaacgccaatgggcagcagccctcagatg
agtggcatggctgcgttggctgcagcggctgctgccacacagaagatcccgccctccacg
gccaccatgcagcttccagctggtgctactatggtcaagaccgtggccatgagccccggt
tcacagactgtcaaagtagcctcgcctgttatggttagtaacccagcaacccgcatgctg
aagactgctgcggctcaggtgggcacgtcaggtgttgtcacacccggaacgccttctcgc
cctatcatcaccgtgcacaagtctggcacggtgacggttgcccagcaacaccaggtggtt
accacggtagtgggaggagtcaccaagacaatcacccttgtcaagagcccccttactatg
gggggaggtggaacactgctgaccgcggccaaccagggtcaaaacaaagtgatgtctggg
aaggacgtgcagcattggctgtctaacctgtccaacctggggaaggtgatgtccgtggtc
cagaccaagcctggtcagacaggagcggtgactggacaggctggctccagcctccagcac
atcatacagacgaaaggtcccctcccggcgggaaccatcctgaagctggtgacctcagcg
gatggcaagcccaccaccatcatcactacgtcccaggccgggaccgcggggggcaagccc
accatcctatcctacagcggcatgcccaccaccaccaagcctggcacgcacatcatcaag
accatacctatgtctgccatcggacaagcaggagtgacaggaagtggtatgaagtccccc
attaccattatcaccactaagatgatgacaccaggcaccgggacaccaggcaagatcatc
agcgcaatgcccagagctggggctggtcagcagggactcacacaggtggtgctgaagggt
gccccaggacagcccgggactattttacggaccgtccccatgggaggtgtacgtctcgtc
tccccggtaactgtttccggtgtcaaacctaacgtcaccacccttgttgtcaagggaacc
acaggtgtgacaacgtttggtacggtgactggtacagtgtcttcgagcctggcgggagga
agtgttgccacggctactcccatcaccaccttgggcaccatgaccactctgcctggacag
gtcaccgtctccgcagctcaggcgggagctcagcccactcaggtgaccctgatcacgacc
cccagtggtgtggatgctcagcctgtccacgacctcccggtctccatcctgtcctccccc
acctccgccgacccctcgtccacccagcccgaggcaggcgacccaggaacggtaaccctg
gtctgctcaaaccccccctgcgagacccacgagaccggcaccactaatacagctaccacg
gcctccgctaacatgactggtaatggtggggtggagagggtgtgttcaaacccgccgtgc
gaaacccacgagaccggcaccaccaacactcaaacgacagcgtcctccaacatgggccag
gtacagcaggtgtgcaccaacccgccatcagagacccacgatacaggtaccaccaacacc
cagaccaccgccagctgtaacatgggatccaaccagcaacaacaaggctccagcgtaacc
aacaacaccagcgggtctgatcccccgtcctctccgcccccctcctcctccggagacctc
tccccctcgtctctttctggtaccagctctgtgcccggggtgctacgaccggagactctg
agaacagggaccacctacacctcgaccaccgcacgctctaacatgggctctgacaagatg
ggcatgacgctcagctcctcgtcctcagataaccagagcaagtcatccagcggaggagga
ggaggaggaggaggaggatcccccctcacctctcctgtctgctccagtccaccctgtgaa
acgcaccagactggccccactgaggccggagctgagggcagaagcgccacacaggtctgc
tccaatccaccttgtgaaacacacgagactggcactaccactacgtcgacgcaggccaac
tccagtatgggcatcgggcagactacagggacagtgcagagagtgtgttccaatccgccg
tgtgagacgcgcgaaacaggaaccaccaacaccccgtctcagactacgtccaacctgaca
ggaacggggacagggacggggacaggaacgttgacagggacggggacagggacgggcacg
gtccagagagtgtgttccaatccgccgtgtgagacgcacgaaacaggaaccaccaacacc
ccgtctcagactacgtccaacctgacagggacggggacagggacgggcacggtccagaga
gtgtgttccaatccgccgtgtgagacgcacgaaacaggaaccaccaacaccccgtctcag
actacgtccaacctgacaggaacggggacagggacgggcacggggacgggcacggtccag
agagtgtgttccaatccaccgtgtgaaacacacgagaccggcaccaccaacacggctact
acagcccagcctggtgactcgacacagggagacaacggaactacagaggctccctcgtcg
tcctcggtaaccaccgagtccagtgccgtggtggcggctggccgagcagttaccacggtt
acccagtccacacccacacctggaccctccgtacctgagatctcgtcgatgtctgggtcg
tctgaggcgatggtggcggcatgtatagagggagaggaggccatgcagacggactgtctc
ccagagggcacagtgagggtcgtgaccctggaagaggctgctgcagctgggatacaggtc
catgtggagggcatggaggaacagaaccagggggagcaggagggcctgcctgcggagctg
atgtctgaaggtgacgcggggggccagcagaccctgatggtgacgggtttaacccccgag
gagctggctgttaccgctgcagccgagcaggcagcacaacacgctgctactgaggaggct
aacgcccaggccatggccatacaggctgtcctgcaggccgcacagcacgctgtcatgaat
gaaggagacagtggccaggagggccagcatcaaaccaccaccatccccattgtgttgact
caggcagagctggcagccctggtacatcaacaacaacagctgcaggaagcccaggctctg
gcccaggcggcggcagcggcagcagcagcagcacagcacaaccagcccacagagggcctg
gccccagcagacagcctgaacgacccggcgtcagagagtaacggccaggagctggctgct
gccgtgacccaggcggtggcccggctagccccaaactgcaccatggtggtgacaaccccg
gctaagactcagcccatgatggtggcaaccccggctaaaactcagcccatgatggtggca
accccggctaaaactcagcccatgatggtggcaaccccggctaaaactcagcccatgatg
gtggcaaccccggctaaaactcagcccatgatggtggcaaccccggctaaaactcagccc
atgatggtggccaccccggctaaaactcagcccatgatggtggccaccccggctaaaact
cagcccatgatggtggccaccccggctaaaactcagcccatgatggtggccagtccggct
aagatgcaggcagctgcgaccctggctgaggtggctaacggcatagagtctgctgcaggg
agacaaggagctcctcctgcggtggccaaagccccggtgaagaaagacaaccagtggttt
gatgttggcatcgtcaaggtgaccaacaccgtggtcacacactactacttgcccgctgac
gaccaagccactgtcgatgatgactctggggcgatcccagactacagtcaaatgaagaag
gtggatctccagcctgggacggcctataaattcagagtggccgggatcaacacctgcggt
cgggggaacttctcagaggtctcggccttcaagacgtgtctaccaggcttccccggagct
ccctgtgctatcaagatcagcaagagcccagacggcgcccacctgacctgggagcctccg
tcggtcacatctggtaagatcattgagtactcggtgtacctggccatccagagcgcccag
agcggggagcaggccaagcccaccaccaccaccaccccagcccagctggctttcatgcga
gtgttctgtgggcccaacccttcctgcctggtgcagtcgtccagcctctccaacgcacac
atagactacaccaccaagcctgccatcatcttccgcatcgcagcccgcaacgagaaaggt
tacggccctgccacgcaggtcaggtggctccaagagatgggtaaagatggcgttgcagct
aaaccaactgctaagagaccaggctcctcacctgacatgaaagctgccggtccaaagaag
gccagatcagaccagtaa
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