Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139417894
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Entry
139417894 CDS
T10872
Name
(RefSeq) serine/arginine-rich splicing factor 1B-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139417894
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139417894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139417894
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
SR proteins
139417894
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
139417894
NCBI-ProteinID:
XP_071022971
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All DBs
Position
10:complement(116088..135688)
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AA seq
255 aa
AA seq
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MSGDNMSGGGSVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGP
PFAFVEFEDPRDADDAVHGRDGYDYDGYRLRVEFPRSGRGGGRGGMGGGRGGGDGGGPRG
RYGPPSRRSEYRVIVSGLPSSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTY
AVRKLDNTKFRSHEGETAYVRVKVDGPRSPSYGRSRSRSRSNGRSNSRSRSFSPPRRSRA
SPRYSPRHSRSRSRT
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggggataatatgtcgggcggcgggagcgtggttcgtggcccagcgggaaacaac
gactgtcggatctacgtgggtaacctgccgcctgatattcgcactaaagacgtggaggac
gtgttctacaagtacggagcgatccgggatatcgacttgaagaaccggagaggaggaccg
ccgttcgctttcgtggaattcgaggaccccagggatgctgatgatgcggtgcacggtcgt
gatggttatgactacgatggttaccgtctccgggtggagttcccccgtagtggtcgtggc
ggggggagaggggggatgggcggtggaaggggcgggggtgacggtggaggacccagagga
agatatggacctccatcacgacgctctgagtaccgggtcatcgtctccggtctcccctct
agtggtagctggcaggacctaaaggaccacatgcgcgaggcaggtgatgtatgttacgct
gacgtgttccgggacggtaccggcgtggtggagttcgtacgcaaggaggacatgacctac
gctgtccgcaagctggacaacaccaagttccgctcccacgagggagagactgcctacgtg
cgtgtgaaggtggatggacctcgcagccccagttacggacgctcccgctctcgtagccgt
agcaacgggcgtagcaacagccgctcacgcagcttctcaccgccgcgacgcagccgggcc
tctccacgctactcgccacgacactcacgctcccgctcccgcacctag
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