Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418007
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Entry
139418007 CDS
T10872
Name
(RefSeq) glucocorticoid receptor isoform X1
KO
K05771
glucocorticoid receptor
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139418007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139418007
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139418007
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
139418007
Nuclear receptors [BR:
ocla03310
]
3. Estrogen like
3C. 3-Ketosteroid receptor
139418007
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Motif
Pfam:
GCR
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
139418007
NCBI-ProteinID:
XP_071023184
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Position
10:11592488..11701449
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AA seq
758 aa
AA seq
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MDPGGLKHSKDKGLAFGKLSESSVDGSFSGDTGGSKSTTSTSLMHLPGSRPQPPARDSAN
GLNVTTTQMELSTGGLTIEEAEVKVMEKALRMQQPQKSQQNQQLFENFALLEASIADLNR
SNTPGSSVFGRPHDLFSLKTENFSPMDKDRLDMGSVSFGQSQKDLDVNERLLGDNTMDIL
QDLDLHGSLSDLNEFYVSDEAAFLSSLSVEDVLLEDGNMETKPIDCSNGGNCTNVDSADP
QKQLLEPGVSMPVIKTEEDADTSFIQLCTPGVIKQENDRRSYCQISSLDLPSTHNSAGSI
SGPSYPYGANTSTAVSLQQDQKPVFGLYPPLPSVSDSWNRGNGYATGSGMSSSSFPVGFS
SPKARSEASGSASSAPAKPSGPTHKICLVCSDEASGCHYGVLTCGSCKVFFKRAVEGWRA
RQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARKNKKLIRLKGQQTT
MEPNPPPPDERACALIPKSMPQLVPTMLSLLKAIEPEAIYSGYDSTIPDTSTRLMTTLNR
LGGQQVVSAVKWAKSLPGFRNLHLDDQMTLLQCSWLFLMSFGLGWRSYQQCNGGMLCFAP
DLVINDERMKLPYMTDQCEQMLKISTEFVRLQVSYDEYLCMKVLLLLSTVPKDGLKSQAV
FDEIRMTYIKELGKAIVKREENSSQNWQRFYQLTKLLDSMQEMVGGLLQICFYTFVNKSL
SVEFPEMLAEIISNQLPKFKDGSVKPLLFHALNHDTMP
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggatccaggtggactgaaacacagcaaggacaagggcttggctttcggtaaactctca
gagagcagtgtagacggaagcttctcgggtgacacaggtggttccaagtccaccacatca
acctccctgatgcatctgccaggctccagaccccagccaccagccagagactccgccaac
ggactgaatgtcactacgactcagatggagctctccacagggggactcactatagaggag
gctgaagtgaaggtaatggagaaggcccttagaatgcagcagccacagaaatcgcagcag
aaccaacagctgtttgagaactttgctctgttggaggcgagtattgcagatttgaatcga
tccaacaccccagggagctctgtatttggacgccctcatgaccttttctctctgaaaacg
gagaacttctcacccatggataaagacaggcttgacatggggtcagtcagctttggacag
tcacagaaggacttggatgtcaacgagaggctccttggcgacaatacaatggacattctg
caggatttggacttgcatggctctctgtctgacctgaatgagttttatgtgtctgacgag
gctgctttcctttcctccctgtcagtggaggatgtcctgctcgaggacggcaacatggaa
accaagcccatagactgtagcaatgggggaaactgtacaaatgtggacagcgcggacccg
cagaagcagcttctggagccaggtgtctccatgcctgtcatcaagacggaggaggatgct
gacacctccttcatccaactttgcaccccaggggtcatcaagcaagagaatgatcgtcgg
agctattgtcagatatccagcctggacttgcctagtacccacaactcggcgggctccatc
agcgggccgagttacccctatggagcaaacacctcgacggcagtgagtcttcagcaggat
cagaagcctgtctttggcctgtatcccccactgccctcggtcagtgacagctggaacaga
ggcaacggatacgcgactggatcagggatgtcgagctcatcttttcctgtcggcttcagc
agtccaaaggcaagatccgaggccagcggctctgcgtcgtcagcccctgccaagcccagc
ggtccaacccataagatctgcctggtgtgttcagatgaggcgtctggttgccactatgga
gtcctcacctgcggaagctgcaaggtcttcttcaagagggccgttgaaggatggagagca
cgacaaaacacagatggacaacacaactatctgtgcgctgggaggaacgactgcatcata
gacaagatccgcaggaagaactgcccggcgtgccgcttccgcaagtgtctccaagcaggg
atgaatctggaagcgaggaaaaacaagaagctgatccgattaaaaggtcagcagacgacg
atggagccgaaccctcccccacctgacgagagggcctgcgccttgatccccaagtccatg
ccccagctggtacccaccatgctatccctgctcaaagccattgagccggaggccatttac
tctggctacgacagcaccattcccgacacctccacccgcctcatgaccaccctcaacagg
ctgggcggacagcaggttgtctcagccgtcaaatgggccaagtccctaccagggttccgg
aaccttcacctggatgaccagatgaccctgctgcagtgctcctggctgttcctcatgtcg
ttcggcttgggctggcgctcctaccagcagtgtaacggggggatgttgtgcttcgcccct
gacctggttattaatgatgagaggatgaagttgccctacatgaccgaccagtgtgagcag
atgctgaagatttccactgagtttgtgaggctgcaggtgtcctatgacgagtacctgtgt
atgaaagtcctactgctgctcagcacagtaccaaaggatggattgaagagccaggctgtg
tttgatgagatccgcatgacctacatcaaggagctggggaaggccatcgtcaagcgggaa
gagaactccagccagaactggcagaggttctatcaacttactaagctattggactccatg
caagagatggtggggggcctcctgcagatctgtttctacacatttgtgaataaatccctt
agcgtggagttcccggagatgctggctgagatcatcagcaaccaattaccgaaattcaaa
gatgggagcgtcaagccacttctgtttcatgccttaaaccatgacacaatgccttaa
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