Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418020
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Entry
139418020 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-1-like isoform X1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139418020
04082 Neuroactive ligand signaling
139418020
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139418020
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139418020
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Gene cluster
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
139418020
NCBI-ProteinID:
XP_071023206
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Position
10:complement(12693959..12723616)
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AA seq
477 aa
AA seq
DB search
MRILGFWVTNHSPTMGGRTGTAILLCVWACLLVAKVLCGKSSGQNGQTDEQKDNTTVFTR
ILDSLLDGYDNRLRPGLGERVTEVKTDIFVTSIGPVSDHDMEYTIDVFFRQSWKDERLKF
KGPMAVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRITEEGTLLYTMRLTVRA
ECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYVWTRGAAQSVVVAEDGSRLNQYDLMGQS
VDSGVVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTV
FGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAW
DGKSVVPEKQKKKKESLLKKNNTTAYTAATATAFAPNIARDPGLATIAKSAPPPPTEPKE
EPKPKPPEAKKTFNSVSKIDRIARIAFPLLFGTFNLVYWATYLNKKPKLQGMTPGSH
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatcctgggcttttgggtgacaaaccactctccaaccatgggtggacggacagga
acggccatactgctatgtgtgtgggcctgtttgctggtggccaaagtgctttgtgggaaa
agctctggacagaatggccagacggacgagcagaaagacaacacaacagtgttcacccgg
atcctagacagtcttctagatggctacgacaatcgtctcagaccagggttgggagagcgt
gtaactgaagtcaagactgacattttcgtgacgagtattgggcccgtctcggaccatgac
atggaatacaccattgatgtgttcttccgtcaaagctggaaggacgagcggctaaaattt
aaagggccaatggcggttctccgtttgaacaacctgatggccagtaaaatctggacccct
gacacattctttcacaatggcaagaagtctgtggcacacaacatgactatgcccaacaaa
ctcctacgaatcacagaggagggaactctgctctatactatgagactgaccgtaagggca
gagtgtcccatgcacctggaggacttccccatggatgcccatgcttgcccactgaagttc
ggcagctatgcttacaccagggctgaggttgtgtacgtgtggacgagaggggcagcccag
tctgttgtggtggctgaagatggctctcggctcaaccagtatgatctgatggggcaaagc
gtggactctggggttgtccagtccagcacaggagagtatgttgtcatgacgacacacttc
cacctgaagaggaagattggttattttgtcatccagacgtacctgccctgcatcatgacg
gtgatcctgtcccaggtgtccttctggctcaacagagagtccgtcccagccaggactgtg
ttcggagtgacaactgtgctgaccatgaccaccctcagtatcagtgctaggaactctctt
cccaaggtggcctatgccacagccatggactggttcattgcagtctgctatgcctttgtc
ttctctgccctcattgagtttgctacagtcaactacttcacaaagaggggctacgcctgg
gatggaaaaagtgtggtgccagagaagcaaaagaagaagaaggagtccctcctgaagaag
aacaacaccaccgcctacaccgccgccactgctacagccttcgctccaaacattgccaga
gatcctggtttggccaccattgccaaaagtgctccccctccccccactgagcccaaggaa
gagcccaagcccaagccaccagaggccaagaagactttcaacagcgtcagcaagatcgac
aggatcgccagaatagccttcccgttactcttcggaacctttaacctggtctactgggca
acttacttgaataaaaagcctaagttacagggtatgaccccaggatcccactaa
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