Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418059
Help
Entry
139418059 CDS
T10872
Name
(RefSeq) small fragment nuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139418059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139418059
03009 Ribosome biogenesis [BR:
ocla03009
]
139418059
Messenger RNA biogenesis [BR:
ocla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
139418059
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
RNases
139418059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
139418059
NCBI-ProteinID:
XP_071023317
LinkDB
All DBs
Position
10:complement(16041433..16059032)
Genome browser
AA seq
305 aa
AA seq
DB search
MPAFLCTRASAWSFSSKLLCKFANFPTLRPSSSQRFSASRHLFLQSSTSLNCAISEQRKG
LAPRRTGLNIFVHNISTYRKKMSSSRSDPGMRQRMVWVDLEMTGLDIEKDQIIEMACLIT
DSELNVLAEGPNLIINTTGELLDGMDNWCKEHHGNSGLTQAVRDSKISLQQAEYEFLSFI
RQHTPPGHCPLAGNSVHADKKFLDKYMPQFMHHLHYRIIDVSTIKELYGGFQKNTSSHHR
RKRLTEHWAIFRRASRNCTSTEHMFSNRKQRKRSARYCKIAKATKVFEGVPRWVLRLRDG
VRGIA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgttcttgtgcactcgagcatcagcgtggtctttcagctcgaaacttctttgc
aagtttgcgaattttcctactcttcgcccaagcagcagtcaaaggttttcagcaagtcga
catttatttttgcagtcaagcacaagtctgaactgcgctatttctgagcagaggaaaggc
ctagcgccaagacggaccgggctgaatatttttgtacataatatctccacataccgcaag
aaaatgtcatcttcgcggtcagaccctggcatgaggcagaggatggtgtgggtggacttg
gagatgacaggactggacatagagaaggaccagatcattgagatggcgtgcctcataaca
gattcagaattaaatgttttagctgagggtcccaatttgataatcaacacaaccggcgaa
ctgctggatgggatggacaactggtgtaaagaacatcatggcaattctgggttgacacag
gcagtgagggacagtaagatctcactgcagcaggctgagtacgagttcctctctttcatc
agacagcacaccccacctggccactgtccccttgcagggaactctgtgcatgctgacaag
aagttcctggacaagtacatgcctcagttcatgcaccatctccactacaggatcatcgac
gtgagcacgatcaaggagctctacggtggtttccagaagaatacaagctcgcaccacaga
agaaagcgtctcacagagcactgggcgatattcaggagagcatcaaggaactgcacttct
acagagcacatgttttcaaatcgcaaacagaggaaaagaagcgcaagatattgcaaaatt
gcgaaagcaacaaaagtgtttgagggggttccaaggtgggtgttgaggttaagagatgga
gtaagaggtattgcctga
DBGET
integrated database retrieval system
