Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418122
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Entry
139418122 CDS
T10872
Name
(RefSeq) RNA-binding protein Nova-1-like isoform X1
KO
K14944
RNA-binding protein Nova
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139418122
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139418122
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_Vigilin
KH_NusA_2nd
DUF1233
Motif
Other DBs
NCBI-GeneID:
139418122
NCBI-ProteinID:
XP_071023430
LinkDB
All DBs
Position
10:20210851..20234564
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AA seq
494 aa
AA seq
DB search
MMAGGAVEQNGIFLNPLHHNQQPYMESDPPDSRKRPLTPTEEDCCTKRTNTGEEGEYFLK
VLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVH
SFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLIVPNSTAGLIIGKGGATVKAV
MEQSGAWVQLSQKPEGINLQERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLNISYSN
ISGPVANSNPTGSPYANSAEVLPNAAAAAATASSLLGQAGLAGMGGFPGTMSSFSGNDLL
AITSALNTLASYGYNTNTLGLGLNPAAASGVLAAVAASANPAAAAAANLLASYASDASGS
GHPAVGLGGFSLGSLAAATGASNGYLNASSPLMASSLLAAEKLGEGAKDVVEIAVPENLV
GAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLISQRIT
YEQGVRATNPQKVG
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgatggccggtggagcagttgaacaaaacgggatattcttgaatcctcttcatcacaat
caacagccctacatggagtcagatccccccgactctcgtaaacgaccactaactccgacg
gaggaggactgttgtaccaagcgcacaaacactggagaggagggtgagtacttcctgaag
gtgctgatccccagctatgcagccggctctataattggcaagggtggccagaccatcgta
cagctgcagaaagagacgggcgccaccatcaagctgtccaaatccaaagacttctaccca
ggaaccacagagcgggtgtgtctgatacagggtacggtcgaggcgctaaatggtgtccac
agcttcatcgcggagaaagtccgcgagatgccccagagcgcccagaaaacagagccagtc
agcatactgcaaccacagaccactgtcaaccccgatcgcgtcaaacaggctaagttaata
gtgcccaacagcacggctgggctgatcatcggtaaaggcggggccacagtcaaggcggtg
atggagcagtcgggtgcctgggtccagctgtcccagaagcctgaaggcatcaacctgcag
gagcgcgtggtcacgatcagcggggagcccgagcagaaccgtaaagccgtggagatcatc
gtgcagaagatccaggaggaccctcagagcagcagctgcctcaacatcagctactccaac
atctcaggccccgtggccaactccaaccccaccggttccccctacgccaactcggctgag
gtccttcccaacgccgctgcggctgctgccactgcctccagccttctaggccaggccggc
ctggcaggaatgggtggcttcccgggaaccatgtccagcttctctggcaatgacctgctg
gccatcacctcggccctcaacacactggccagctatggctacaacaccaacaccctgggc
ctgggcctcaaccccgccgctgcctccggggttctggccgccgtggctgctagtgctaac
ccagctgctgctgctgccgctaacctcctggcctcctatgccagcgatgcctctggctcc
ggccatcctgctgttggcctggggggcttctccctgggctcgctggccgccgccacgggg
gcctccaacggctacctgaatgcctcgtccccactgatggcttcctccctgctggccgca
gagaagctgggagaaggggccaaggacgtggtggagattgctgtgcccgagaatctggtg
ggcgccatcctggggaaaggcgggaaaacgctggttgagtaccaggagctgacgggagct
cgcatccagatctccaaaaagggagagttcatacctggcacgcggaaccgtaaagttacc
ataacagggtcacccgcggcaacgcaagccgcccagtatctgatcagccagaggatcacg
tatgagcagggtgtgcgtgccaccaacccacagaaggtgggctaa
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