Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418165
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Entry
139418165 CDS
T10872
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030
DNA replication
ocla03410
Base excision repair
ocla03420
Nucleotide excision repair
ocla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139418165
03410 Base excision repair
139418165
03420 Nucleotide excision repair
139418165
03430 Mismatch repair
139418165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139418165
03036 Chromosome and associated proteins [BR:
ocla03036
]
139418165
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139418165
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139418165
DNA Replication Termination Factors
ELG1-RFC complex
139418165
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
139418165
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139418165
Check point factors
HRAD17(Rad24)-RFC complex
139418165
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
AAA_22
nSTAND_NTPase5
AAA_14
AAA_16
Mg_chelatase
Viral_helicase1
AAA_11
Rad17
RuvB_N
AAA_19
MipZ
RCF1-5-like_lid
AAA_24
nSTAND3
AAA_assoc_2
AAA_18
ABC_tran
AAA_5
AAA_28
AAA_23
AAA_25
AAA_30
SLFN-g3_helicase
MeaB
NTPase_1
RNA_helicase
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
139418165
NCBI-ProteinID:
XP_071023519
LinkDB
All DBs
Position
10:complement(25256432..25264396)
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AA seq
353 aa
AA seq
DB search
MDVAMNEVDSEQIQTEVQLKKDEAPAKLSSSGYELPWVEKYRPLKLNEIVGNEETVSRLE
VFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIK
MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI
QSRCAVLRYTKLRDEQIMMRLLEVVERESLVTSNDGLEAIIFTAQGDMRQALNNLQSTNS
GFGYINSENVFKVCDEPHPLLVKSMLEHCVNANIDEAYKIIEQLWALGYSPEDIIGNIFR
VCKTFQMPEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLGRLCSKTATPDTS
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggcgatgaatgaggtagattctgagcaaattcaaacagaagttcaactgaag
aaagatgaggcccctgcgaagttgtctagtagtggatatgagctgccatgggttgaaaaa
tacagacccttgaagttgaatgaaatagtaggcaacgaggagactgttagcagattggag
gtgtttgccagagagggaaatgtgccgaacatcattattgcaggtccccccggtacagga
aagaccaccagtattctgtgtttggcgcgagctcttctgggcccagccatgaaagatgct
gtcctggaactgaacgcctccaatgacagaggcattgatgtagttcgaaacaagatcaag
atgtttgcccagcagaaagtcaccctccctaaagggagacacaagatcatcatcctggat
gaggctgacagtatgacagacggagcccagcaggccttgaggaggaccatggagatatac
tctaaaaccacacgcttcgctctggcatgcaacgcctccgacaagatcattgagcccatc
cagtcacgttgtgcagtcctgcgctacaccaagctgagggacgagcagatcatgatgcgt
ctgctggaggtggtggagagggagagcctggtcaccagcaacgacggcctggaggccatc
atcttcaccgcccagggagacatgagacaggcgctgaataacctacagtccacaaattct
gggtttggctacattaacagtgagaatgtgttcaaggtgtgtgatgagccacaccccctg
ttggtgaaaagcatgctcgaacactgtgtcaatgcaaacattgatgaggcttacaagatt
attgagcagctgtgggccctgggttactcccctgaggacatcattggtaacatcttcaga
gtgtgtaagactttccagatgccggagtatctcaagctggagttcataaaggagataggc
tacacccacatgaaggtggcagagggcgtgaactccctgctgcagatggcaggcctcctg
ggtcgactgtgcagcaagacggccaccccggataccagctaa
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