Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418207
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Entry
139418207 CDS
T10872
Name
(RefSeq) homeobox protein cut-like 1 isoform X1
KO
K09313
homeobox protein cut-like
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139418207
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
139418207
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
139418207
NCBI-ProteinID:
XP_071023582
LinkDB
All DBs
Position
10:complement(27001488..27207102)
Genome browser
AA seq
1593 aa
AA seq
DB search
MFNKRWPCSIAPLRVLRALPLLSTELQPLALSLSASHSVSICLKMAANAGSMFQYWKRLD
LQQLQRELNATATALANRQDESEQSRKKLIDQSREFKKNTPEDLRKQVAPLLKGFQAEID
AVSKRSKESEAAFLNVYKRFIDVPDPVSALEAAQQLQLKVQRMHDIETENQKLRETLEGY
TQEIAEVKNHEVTIKALKEKIEEYEETLKKQAKELGQEERREREEEGQLHNDHAEEESQQ
QENQESVVSKLEEANRKAQSLQTALEATQAELLELKSKYDEESAAKGDEIEVVMSDLKRA
NQRAEVAEREAEALREQLSSANKSLQLATQIQKAPDMEQALEVLSRSSLEVELSAKEREV
LQLAEDVQRLQASLANIRENSASQISQLEQQLSTKESLLKQLEEKLREQADYEAIKKELS
ILKSMEFGSSNFSSAQDSKKPLELLLKSRGLQSESSSLRLNSSELSGVRERKVKDSSEGQ
QRLPATPMGTNLQGSPPPPSSQLLLRTGSGGSSDTTPVTTANGTHHFSPTGGGLGGQDFF
SPSSLVSAGTAFPLAGKVSLNSLLQRQLMQTFYSKALQDSVSGQALLFSPAHYPTPNSLS
ASPLPPHQSLQSQSQHPSAGSPDVNGLAPSPSQSEGAGSVSEGEDMDTSEIARQVKEQLI
KHNIGQRIFGHYVLGLSQGSVSEILARPKPWSKLTIRGKEPFHKMRQFLSDEQNILALRS
IQGRQRENPGQNLNRVFQEVPKRRTGSEGSSRAGNITTRIRTPESGSDEAIKSILEQAKR
ELQVQKADGVDNRQRRQTGYPRGMGNYFAKYAQSLRLVSLPAVDLSQTPPSSSIGGGGSI
GSGGSSSSDETIRSILEQARREMEAQQAALEPILKPSSMGTSDLALLSPKLLGASTLPAS
YSPLALSLKKPPIPPSSSPSSLLDLHSAMVKEAGEVVVGEGGVGGGSLMDGGTKQGRGSW
RDQWWNSMHPGGRGVTSSMNDDVRSQEDSKEKPPRLAGSSSALAPFSSSVSISSPDCWKD
WPRAESPYSQAGSEPGGGTNTQGPSRADTPQSSPSPLPLSLSLGPLGSLLTPAAKPVKPV
VAPLTPEQYEVYMYQEVDTAELTQQVKDKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPK
PWSKLTQKGREPFIRMQLWLNGELGQNVLPLQGQPQENTPKTSASCSPAPESPLSSAEES
VKSLGEQVGGEGCGGGGGLSQFPPREPSEPSESQPGTPLPVPGHSGLSIQEMVAMSPELD
TYVITKKVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQL
WLQDPRNVEKLMDMKRMEKKAYMKRRHSSVSESQTADSGGLSGGDFSQGGSPQHGLGHHL
HQQQPPQQHLKKARVVLAPEEKEALKRAYQQKPYPSPKTIEELASQLNLKTSTVINWFHN
YRSRIRRELFIEEIQRGEGGEGISPSTRAGKASEGESCDGTESDGTVEGTRPGHEHHPAS
EGEWGSDHRDEGTTLATGSTAAGTSGHHKGGSLDSLFSFPEISHVSSVSVAATAAARNPR
DNSLRKKKAANLNNIIHRLEKAASKDEPHEWEF
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataagcgatggccctgttcaattgctccgctccgtgttttgcgcgcgctcccc
ctcctttctactgaactccagcccctcgcgctctctctatcagcctctcactcagtctca
atatgtctcaagatggcggccaatgcgggatcgatgtttcaatattggaagcgcttagat
ttacagcagctgcagagagaactgaatgccacagccacagccctggccaacagacaagat
gagagcgagcagtccaggaaaaagctcatcgaccagagccgcgagttcaagaaaaacaca
ccagaggatctgcgaaagcaggtagctccattgctaaagggcttccaagcagagatcgac
gcagtgagtaaaagaagtaaggagtcagaggctgccttcctaaacgtgtacaagagattc
atcgatgtcccagaccctgtgtcggccctggaggctgcccagcagctacagctgaaggtc
cagaggatgcacgacatcgaaacggagaaccagaagctccgcgagacgctggagggctac
acccaggagatcgctgaggtcaagaaccatgaggtcacaattaaagcacttaaggagaag
atagaggagtatgaagagaccctgaagaaacaggccaaggagctgggccaggaggagagg
agagagagagaggaggaggggcagcttcacaacgaccatgcagaggaggagagtcaacaa
caggagaaccaggagtctgtggtgtcaaagctagaggaggcaaaccgtaaggcccagtcc
ctacagacagcacttgaagcaactcaggcagagcttttggaactgaagagcaagtatgac
gaagagtcggcagcaaagggcgatgagattgaagtggtgatgtcagacctgaagagagcc
aatcagagagctgaggtagcggagagagaagcagaggctcttcgggaacagctgtcgtcc
gccaacaagtccctccagcttgccacacagatccaaaaggcccctgacatggagcaggcc
ctggaggttctgtcgcgctccagtctggaggtggagctgagcgccaaggagcgggaggtg
ctgcagctggccgaggacgtgcagagactgcaggctagcttggccaacatccgggagaat
tctgcctcgcagataagccagctggagcagcagctcagcaccaaggagagcttactcaag
caactggaggagaaactgcgagagcaggcagactacgaagccatcaagaaagagctcagt
atcctgaagtcaatggagtttggctcttcaaacttctcctcagcacaggactctaagaag
cctctggagttgttgttgaagagtcgaggcctgcagtctgagagctcctccctgcgccta
aacagcagtgaactgagtggtgtgagggagcgaaaggtcaaagactcatcagagggtcaa
cagcgtcttcctgccacgcccatgggcaccaacttgcagggctcccctccccctccctcc
tctcaactcctcttgcgcactggctcaggtggttcctccgacaccacccctgtcaccacc
gccaatggcacgcaccacttctcgcccacgggcggcgggctgggtgggcaggacttcttc
agcccctcctcgctggtgtcggcaggcaccgctttccccctggcgggcaaagtgtcgctc
aattccctgctgcagcgccagctcatgcaaaccttctactccaaagccctgcaggactca
gtgtctggccaggccctgctcttctcccccgcccactacccaacccctaactccctctca
gccagccctctgccaccccatcagtctttgcagtcgcaatcccagcacccgtcggcgggc
agcccagacgttaatggcctagccccctcgcccagccagtcagagggtgcagggagtgtc
tcggaaggtgaagacatggacacgtctgagatagcgcgtcaggtcaaggagcagctgatc
aagcacaacattgggcagaggatcttcggccactacgtgctggggttgtcccagggctcg
gtcagtgagatactggctaggcccaagccctggagcaagctgaccatcaggggcaaggag
cccttccacaagatgaggcagttcctatctgacgagcagaacatcttggcactgcgcagc
atccaggggaggcagagagagaacccaggccagaacctgaacagagtgtttcaggaggtt
ccgaagcgaagaaccggctccgaaggctcctcgagggcaggtaacatcaccacgcggatc
cgtactccggagagtgggtcagacgaggccatcaagtccatcctggagcaggccaagaga
gagctgcaggtccagaaggctgatggggtggacaacagacagcgacgacagacaggttac
ccccgaggcatgggcaactatttcgcaaaatatgcacaaagtctcagactcgtctctctc
cctgcagtggacttgtctcagacccctccctcgtccagcattggtggtggtggtagtatc
ggctcaggtggatcctccagctcagacgagaccatccgctccatcctagagcaggcaagg
agggagatggaggcccagcaggccgccctggagcccatcctcaagccctcctccatgggc
acctctgacctggccctgctctctcccaaactcctgggcgcttccactctcccggcctcc
tactcacccctggccctctccctcaagaagccccccatccccccatcctcctctccctcc
tccctcctggacctccactctgccatggtgaaggaggcaggagaggtggtggtgggagaa
ggcggggtaggaggagggtctctaatggacggagggaccaagcaggggcggggctcctgg
agggaccaatggtggaatagtatgcaccccggggggcggggagtcacgtctagcatgaac
gacgacgtgcggagtcaggaggacagtaaggagaagcctccccggctagccggctcgtcc
tcggcgctggcccccttctcctcctccgtctccatctcctccccggactgctggaaggac
tggccccgggctgagtccccatactcccaggccggctccgagcccggcggaggcaccaac
acccaggggcccagccgcgctgacaccccccagagcagcccctctcccctgcccctgtcc
ttgagcctggggcccctgggttccctattgacccccgcagccaaaccagtcaagccggtg
gtggcgccgctcacgcctgagcagtacgaggtctacatgtaccaggaggtggacacggcc
gagctcacccagcaggtcaaggacaagctggccaagaacggcatctgccaacgcatcttt
ggagagaaggtgctgggcctgtctcagggtagtgttagcgacatgctgtccaggcccaag
ccctggagtaagctgacccagaagggccgggagccctttatccgtatgcagctgtggctc
aatggagagctggggcagaacgtcctgcccttacagggccagccacaagagaacacccca
aagacctcagccagctgcagcccagcaccggagtcacccctcagctcagccgaggagtca
gtgaagagcttgggggagcaggtgggaggagagggatgtgggggtggaggagggttgtcc
cagttcccccccagggagcccagcgagccctctgagtcccagcccggcacaccgctgccc
gtccccggtcactcaggtctcagcatccaggagatggtggccatgtccccggagctggac
acctacgtcatcaccaagaaggtcaaggaagtgctgaccgataacaacctcggtcagcgt
ctgtttggggagaccatcttgggtctgacccagggctcggtgtctgacctgctggcgagg
cccaagccctggcacaagctcagtctgaagggacgtgagcccttcgtccgcatgcagctc
tggcttcaggatccacgcaatgtggagaaactcatggacatgaaacgcatggagaagaaa
gcctacatgaagcggcgccacagctcggtgagcgagagccagactgcggacagtgggggc
ttgtcagggggagacttcagccaggggggcagcccccagcacggcctcggccaccacctg
caccagcaacagcccccccagcagcacctgaagaaggctcgtgtggtgctggcccccgag
gagaaggaagccctgaagagggcctatcagcagaagccctacccctcgcccaagaccatc
gaggagctggcgtcacagctcaacctcaagaccagcaccgtcatcaactggttccacaac
tataggtctcgtatccgacgggagctgttcattgaggaaatccagcgaggtgagggcggt
gagggtatctccccgtccaccagagcgggcaaggccagcgagggcgaaagctgcgacggc
accgagtcggatggcacggtggagggcactcgccccggccacgagcaccacccagcctcg
gagggcgagtgggggtccgaccacagggacgagggaaccaccttggccaccggcagcacc
gccgcaggtaccagcggccaccacaagggcggatccctggacagcctgttcagcttcccc
gagatcagccatgtttcctctgtgtccgtggctgctaccgccgctgcccgcaacccccgc
gacaacagcctgcgcaagaagaaagccgccaacctcaataatatcatccaccgtctggag
aaggccgcaagtaaagacgagccccatgagtgggagttctaa
DBGET
integrated database retrieval system
