Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418248
Help
Entry
139418248 CDS
T10872
Name
(RefSeq) nuclear receptor corepressor 1-like isoform X1
KO
K04650
nuclear receptor co-repressor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139418248
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139418248
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139418248
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139418248
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
139418248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
LOB
Motif
Other DBs
NCBI-GeneID:
139418248
NCBI-ProteinID:
XP_071023651
LinkDB
All DBs
Position
10:29450105..29576808
Genome browser
AA seq
2526 aa
AA seq
DB search
MSSSSGYPPTQGSFSSEQSRYPSHSVQYTFSTTRHQQEFTVPDYRGHLQDQQGRRRPSLL
SEFHPGTERPPERRHGYEQQFHSVTSQQQADGHEALEAKRPRMETVSEAHFARGALPGGI
ILPLQSHQVQDSLRANLGEVNKETQFSGMKAESQAPGGLHHVGEVPDSSPSRLSKEELIQ
SMDRVDREIAKVEQQIFKLKKKQQQLEEEAAKPVEPEKPVTPPPIPQEHNKHRSIVQIIY
DENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHDNIKTNQVMRKKLILFFKRRNHAR
KQREQNICQRYDQLMEAWEKKVERMENNPRRKAKDSRTREYYERQFPEIRKQREQQERFQ
RVGQRGTGMSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMYDTEQRRVRFINM
NGLTDDPMKVYKARQFMNVWTEHEKEIFKEKFVQHPKNFGLIASYLERKCVSDCVLYYYL
TKKNQNYKTLVRRNYGRRRGRNHQITRSSQEEKSDDKPEEDKLEKSEKKEDEQNKEEEEK
DEKEDSRDIGKDKDKCDGGEDEDGKEQSTPRGRKTANSQGRRKGRITTRSMANEAASVAA
EEPPPPEPLLPSEPPQPSKPEPTTQKAVREPTKSAPGEPPMDPNRGAGGAAAANGETGET
SRWTEEEMEVAKKGLVEHGRNWPAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQD
TRRARGDRDPSQSESMASADDDQNPEDSDGGDNSSDTESAPSPSDPSKAGGDSQRGDGVG
GSENQWSNKGQASNGRVQEPSYGELRVKLEKSPEGEAREPGSQEDGERARVAYEGHGHPK
SEPQDVDMKPGGAGEVQVKVEPDSAKEKGEPEKQREGHHSDNDSSATCSADEDVDAEPER
QRIFSSMDKPSLLSPPGSVLMSTAKQAHLNMQQLQQRAATIPPMVSHYSNPHFSMIRYAH
SARQAHGGRQQGESMSCLDQPPCQVVPFGPGGISIGAPLSGFAMFQHQITAVHESAHAEE
KQRQDQADPERSRQPTNCPGFTNHSPTIVDREGKPFPYMPYDMKMALEQEAQSGRPGSPY
GLSPREMSKASPQPNDPNASRYSVPPVLQPAPNQVVQSLPDGVRVTFSRHSRPANIPSPP
PLIPTSKPTDKPSFIQGGSISQGTPGTYLPSHAVYGGPEGAKSSVGSISLGLPRQQDPTK
PVSYIKQEQCSPRGQSEGLLSRTQYEGVVRGGPLDGGISRGNLARGSITQGTPALSGSSI
AADLLKGTITKLPTEDLSSPEKAREQLAKGHVIYEGKSGHILSYDAIKNPREATRSPRTG
HELKRSYDMMEVARGHPGREGAPFEGLISRALPRDSPHGESKERPMMTGSIMQGTPRTSA
EAYEENMKYGKQIKRESPPIRSFEGGIGKGKPYEGVNTIKEMGRSIHEIPRQEQPGQDPR
KTPDMAANIRASMEGSISQGHPLSQSAIKHNVKSLITSPSRLPHGHTMPPLEAMERAKYE
ESKAAAEQRARHTSVVNSATSVLRSTHQEQGKSQLSPGMYQDADARRTPVNYSTSSMSRG
SPMLGRGQEGSGKPASHDRKSTMTPTQRDSVPAKSPVSGGDANHPMASHSPFDPHHRPMA
PGEPRFHLPPHLDPALFHRAVLDPAAYMFPRQPSPTGYHNTYQLYTMENTRQTILNDYIT
SQQMQVIPRPDVARGLSPREQQPIALSYPPGARGIIDLAQMPPTILLPHPGGTGTPTLDR
INYIPGAQPPFPPRPFNQASISAGHQAHLAATAAANQERERERERDREQREKEREREHRE
REQEQRQRERERAVAAAVANDYMRGGPGQPDRPGSRGYLRSPSPSMRSQEAQQQRPSIFQ
GANSKGVITPLMPAAAAAQAGARYSTAADALAALVDAAASAPQMDVNKGKDSSKHDRDDD
MSLSSSVARRQHEQQQQEADRRSMQSPYGPMSLPGGKLHPGYAEGPSGPQGSKDKGPPSK
SRIEEELRTRGKTTITAANFIDVIITSQIASDKDSRERGSQSSDSSSSLSSSRYEIPSGG
AIDVISPANSPAQSQQQQDDRDRADRDRADRDRADRDRADRERADRERADRDRAAQAAAQ
AGMRPFDMIRYRQSAESQQPPSSQADGGYSQSQQVPKTHRVMTLADHISHIITQDFARNQ
DPPQSSATISSSATTTFQSAQLPVSILGPGGRAKVPSRYSPENQAQAPSHHQRPTPSRVS
PDNAPDKPRARPGKSPDRGGRGAIESYEPISPPQSYQDKQQEAREQQQPQRREADQPEMR
GDSRSPGSVSYLPSFFTRLENTSPMVKSKKQEIIRKLNSSGVSDSDVGNAQPGTEIFNLP
AVTSSSSVNPRNHSFSDPASNLGLEDIIRKALMGNLEERPEEHQGGPQPSSNTPSNEARQ
EANPSPSMGKQKLQSKANSRKSKSPNPGQAYTAAERPSSVSSVHSEGDYHQQPPAWSWED
RPSSTGSMQFPYNPLTMRMLSSTPPTSIQTQQPPPGGPLGPQQQQRVWEREPLLSEQYET
LSDSDD
NT seq
7581 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtagctcgggctatccccctacccagggcagcttcagcagtgagcagagtcgc
tacccatcacactctgtccagtacaccttcagcaccacacgccaccaacaggagttcacc
gtccctgactaccgaggtcacctgcaggaccagcaaggtcgacgaaggccctccttgctt
tcggaattccaccctggaactgagaggcctccagagagacgtcatggctacgagcagcag
ttccacagtgtcacctcccagcagcaggctgacggccacgaggctctggaggccaagcgg
ccccgcatggagactgtctcggaggcccacttcgcccgcggtgccctgcccgggggaatc
attttacccctgcagtcccaccaggttcaggacagcctcagagccaacttaggggaggtc
aataaggagacccagttcagtggcatgaaagccgagtcccaggctccaggagggctgcac
cacgtgggggaggtgcctgacagctcgccctccagattgtccaaggaggagctgatccag
agcatggaccgtgtggacagagagatcgctaaagtggagcagcagatcttcaagctgaag
aagaagcagcaacaactggaggaggaagcggcgaagccagtggagccagaaaagccagtg
acccctccccccataccacaggaacacaacaagcaccgcagcattgtccagatcatctat
gacgagaacaggaaaaaagctgaagaggcccataagatattcgaaggtcttggtcctaag
gttgaactgcccctctataatcagccatcggatacaaaagtttaccatgacaacataaag
actaatcaagtgatgaggaagaaactgattctgtttttcaagagaaggaaccatgctcgt
aaacaaagggaacagaacatctgccagcgctacgaccagctaatggaggcctgggagaag
aaggtggagcggatggagaacaacccgcgtcgcaaggccaaagatagccgcaccagagag
tactatgagagacagttccccgagatacgcaagcagagagagcagcaggagcgcttccag
agggttggtcagagaggaactggaatgtctgcgaccattgccagaagcgagcatgagatt
tctgaaatcatcgatggcctttctgaacaggagaataacgagaagcagatgagacagctg
tccgtcatcccacccatgatgtacgacaccgagcagaggcgagtcaggttcatcaacatg
aacggcctgacggatgaccccatgaaggtgtacaaggctcggcagttcatgaatgtgtgg
accgaacacgagaaggagatcttcaaagaaaagtttgttcagcaccccaaaaattttggc
ctcattgcttcttatctagagagaaagtgtgtgtccgattgtgtcctgtactactacttg
accaagaagaaccagaactacaagacactggtgagacgcaactacggcagacggcgaggg
agaaaccaccaaataacacgatcctcacaagaagaaaagtcagacgataaacctgaagag
gacaagttggagaagtcagagaaaaaagaggacgagcagaataaggaagaggaagagaaa
gatgaaaaggaggactccagggacatcggaaaagacaaagacaagtgtgacggcggggag
gacgaggacggtaaggagcagagcacgccacgtggcaggaagaccgccaacagccagggc
cgacgcaagggaaggatcaccacgcgctctatggccaatgaggctgcctctgtggctgcc
gaggagccaccgccacccgagcctctcttgccctccgagccccctcagccttccaaacct
gagcctactacccagaaggctgtgagagagcccaccaaatctgcaccgggtgagcccccc
atggaccctaacagaggagcaggaggagctgctgctgcgaacggcgaaaccggagagact
tctcgctggaccgaggaggagatggaggttgccaaaaaagggcttgtcgagcacgggcgc
aactggccagccattgccaagatggtgggcaccaagagcgaggctcagtgcaagaacttc
tacttcaactacaagagacggcacaacctggacaacttgctccagcagcacaagcaggac
acacggcgggcacggggagatcgagacccgtctcagagcgagagcatggcttcagctgac
gacgaccaaaacccagaggatagtgatggtggagataacagctcagacacagagagcgcc
ccgtccccgtcggacccctccaaggccggaggggattcccagaggggagacggagttgga
gggtcagagaaccagtggtccaacaagggccaggctagcaatgggagggtccaggagccc
tcctacggggagctgagggtcaagttggagaagagccccgagggagaggccagagagcct
ggctctcaggaggatggggagagggcccgggtggcctacgagggccatgggcaccccaag
agcgagccccaggatgtggacatgaagcctgggggggccggggaggtgcaggtgaaggtg
gagcctgactctgccaaggagaagggggagccagagaagcagagggaggggcaccactca
gacaatgactccagtgccacctgcagcgccgacgaagatgtagacgctgagcccgagaga
cagaggattttctctagtatggacaagccttcgttgctcagccctcccggctcagtgctg
atgtccacggccaagcaggcccacctcaacatgcagcagctccagcagcgcgccgctacc
atcccgcccatggtcagtcactatagcaacccacacttttctatgatcagatatgcccat
tcggcgaggcaggcacacggaggcaggcagcagggtgaaagcatgtcttgtttagaccaa
cctccctgtcaagtggttccttttggtccaggtggaatttccataggagcccccctcagc
ggttttgccatgttccagcaccagatcacggctgtgcacgagtcggcccacgccgaggag
aaacagaggcaggaccaggctgaccccgagcgcagcagacaacccaccaactgccctggc
ttcaccaaccacagccccaccatagtggacagggagggtaagcccttcccctacatgcct
tatgatatgaagatggctctggagcaggaggcccagtctggtcggccaggctctccctac
gggctctctcccagggagatgagcaaggcctctcctcagcccaatgaccccaacgcctcc
cgctacagcgtgcctccagtgctccagccagctcccaaccaggtggtccagagcctgcct
gatggagtccgtgtgactttctccagacacagccgacccgccaacattccatctcctcct
ccattaattccaacctccaaacccacagacaagccctcctttatccagggtggctctatc
tcccaggggactcctggtacgtacctaccatctcatgctgtctacggtggcccagagggg
gcaaagagttctgtgggctccatatccctgggcctgcccaggcagcaggaccccaccaag
cctgtgtcctacattaagcaggagcagtgttctccacgtggccagtctgagggactcctc
tctcgcacgcagtatgagggggtagtcagaggaggcccattggatgggggtatcagcagg
ggaaacctagccagaggatcaatcacacagggtacgccagccctgtccgggtccagcatt
gcggctgacctgctgaagggcaccatcaccaagctgcccacggaggacctgagcagccca
gaaaaggctcgggaacagctggccaagggacacgtcatctacgaaggcaagagtggacac
atcctctcctacgacgccattaaaaacccaagagaggccacgcgtagccccaggacaggc
catgagctcaaacgctcctacgatatgatggaggtcgccagaggccaccccgggagagag
ggagcccccttcgaagggttgatcagccgagccctgcccagagacagtccccacggggag
tctaaggagaggcccatgatgactggatccatcatgcaaggtacacccagaacctctgca
gaggcctatgaggagaacatgaagtacggtaagcagataaagagggagagtccacccatc
cgctcctttgagggggggataggtaagggtaagccctacgagggggtgaacaccattaag
gagatgggccgctccatccacgagatcccccgccaggagcagcctggacaggacccccgc
aagacccccgacatggctgccaacatccgagcctccatggagggctctatatcccagggc
catcctctgagccagtcggccatcaagcacaacgtcaagtccctgatcaccagtcccagt
aggctgccccatggtcacaccatgcccccgctggaggccatggagcgggccaagtatgag
gagagcaaggcggcagcggagcagcgagcgcgccacacctctgtggtcaactcggcaacc
tccgtcctgcgttccacccaccaggagcaaggaaagtcccagctcagcccgggcatgtac
caagatgccgacgcccgcaggaccccggtcaactacagcactagctccatgtccagaggc
tcaccaatgctgggccgaggacaggagggctctgggaagcctgcgtcccatgaccggaag
agtaccatgacccccactcagagggacagtgttccagccaagtctcctgtgtcagggggt
gacgccaaccaccctatggcctcccacagccccttcgacccccaccaccgccccatggcc
cccggagagcccaggttccacctacctccacacctagaccctgccctcttccacagggcc
gtcctggacccagctgcgtacatgttcccgaggcagccgtccccaacgggctaccacaac
acctaccagctgtacaccatggagaacacaaggcagaccatcctcaatgattatatcacc
tcccagcagatgcaggttatcccacggcccgacgtcgccaggggcctgtcgccacgggaa
cagcaaccgatagctctgtcttaccctcccggagcgcgagggattattgatctagcccag
atgcctccaactatcctgttgcctcaccctgggggaacaggtactcccactttggaccgc
atcaactacatccctggagctcaaccccctttccctcctaggcctttcaaccaagcctcc
atatctgcaggccaccaagcccacctcgcagctactgcagctgccaaccaggagcgagaa
cgagagagggagcgtgatcgggagcaacgagaaaaagagagagaaagggagcacagggag
cgggaacaggagcaaagacaacgagagcgtgagcgagcagtggctgcagcggttgccaat
gactacatgcgtggaggtcctgggcagccagacagaccaggtagccgtggatacctgcgt
agcccctccccctctatgaggtcacaggaagcccagcagcagcggcccagcatcttccag
ggagccaacagcaagggcgtcatcacccctctcatgccggcggcggcagcagcccaggca
ggagcccgttacagcactgcagccgacgccctggctgccctggtggacgccgccgcctcc
gcccctcaaatggacgtcaacaaaggcaaggactcttccaagcatgaccgagacgacgac
atgtctttatcatcctcggtggccaggcggcagcacgagcagcagcagcaggaggcagac
aggcgctccatgcagtctccctacggcccaatgtctctgccaggggggaaactccaccca
ggatacgctgaggggcccagtggtccccaggggagtaaggacaagggtcctcccagcaag
tcacgcattgaggaagagctgaggaccagaggaaagaccaccatcacggccgccaacttc
attgacgtcatcattacgagccagatcgcctcggacaaggactcccgggagagaggctcc
cagagctccgactcctccagcagcttgtcgtccagtaggtatgagatccccagtggagga
gccatcgatgtgatcagcccagccaactctccagcccagtcccagcagcagcaggacgac
agggaccgggccgacagggaccgggccgacagggaccgggccgacagggaccgggccgac
agggagagggccgacagggagagggccgacagggaccgggccgcacaggcagcagcacaa
gctggcatgcgtccctttgacatgatccgctaccgccagtcagcagagtcacagcagccc
ccctcctcccaggctgacggagggtactcccagtcccagcaggtccccaagacccaccgg
gtcatgaccctggctgaccacatctcgcatatcatcacccaggactttgccaggaaccag
gaccctcctcagtcctccgctaccatctcctcctctgccaccaccacattccagagtgcc
cagctgcccgtgtctatcttgggccccgggggtcgtgccaaggtccccagccgctacagc
ccagaaaaccaggcccaggccccatcacaccaccagagacccacacccagcagagtgtct
cccgataatgcccctgacaagcccagagccagacctggtaaatcccctgatcggggtggc
aggggggcgatagagagctatgagcccatctcccctccccagagctaccaggataaacaa
caagaggccagagagcagcagcaaccacaaaggcgagaggctgaccagcctgagatgagg
ggtgactctcgctcccctggcagtgtcagctacctgccctccttcttcaccaggctggag
aacacctcccctatggtgaaatccaagaagcaggagatcattcgtaagttgaactcctct
ggtgtcagtgattctgatgttggaaatgcacaaccaggcacagagatcttcaacttgcct
gctgtgaccagctcaagtagcgtgaaccccaggaaccactccttcagcgacccggccagt
aacctgggcctggaggacataattcgcaaggccttgatggggaacctggaagaaaggcca
gaggagcaccagggagggcctcagcccagctctaacacccccagtaacgaggcccgccag
gaggccaacccttcacctagcatgggcaaacagaaactgcagagcaaagccaacagccga
aagtcaaagtcgcccaacccaggccaggcatacacagcagcagagcggccctcgtcagtc
tcttccgtccactcagagggagactaccaccagcagcccccagcctggtcctgggaggac
cggccctcgtccacaggctccatgcaattcccctataaccccttgaccatgcgcatgctg
agcagcaccccccccacctccatacagacccagcagcccccacctggaggccctctgggg
ccccagcagcaacagcgtgtatgggagcgagagcccctactgtcggagcagtatgagacc
ctgtcagacagtgacgactga
DBGET
integrated database retrieval system
