Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418256
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Entry
139418256 CDS
T10872
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142
Lysosome
ocla04144
Endocytosis
ocla05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139418256
04142 Lysosome
139418256
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
139418256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139418256
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139418256
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
139418256
Exosome [BR:
ocla04147
]
Exosomal proteins
Proteins found in most exosomes
139418256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
139418256
NCBI-ProteinID:
XP_071023673
LinkDB
All DBs
Position
10:30354179..30401100
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQRWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPATGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDLEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
VQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEEAHLWAELVFLYDKYEEFDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFS
KVKQLPLVKPYLRSVQNHNNKSVNEALTNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLGWFLTE
DKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLFKVDAIKEKVDKL
ETSESLRKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGYPQAPQAQP
GFGYGM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccagaacttgggcatt
aacccagccaacattgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgggagaaggtgggcgagcaggcacaggtggtgatcatcgacatggctgaccccaacact
cccatccgcagaccaatctctgctgacagcgccatcatgaaccctgcctccaaagtcatt
gcacttaaagccgccaaaacccttcagatctttaacattgagatgaagagcaagatgaag
gcccacaccatgactgatgacgtcaccttctggaagtggatctccctgaacacagtggca
cttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatcaaa
gtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgacgcc
aagcagagatggctgctgctcattggcatctccgcacagcaaaaccgtgtggtgggtgcc
atgcagctgtactctgtggacaggaaggtgtcacagcccatcgagggccatgccgcaggc
ttcgcacagttcaagatggagggcaacacagaggagtccacactgttctgctttgctgtg
agaggacaggctgggggaaagttgcacatcattgaggtgggcaccccagccacagggaac
cagccttttccaaagaaagcagtggatgtgttcttccctccagaggctcagaatgacttc
ccagtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagcgga
gagaccatctttgttacggcccctcacgaagccactgccggcatcattggggtcaacagg
aaaggacaggttctgtcagtgtgtgtggaggaggagaacatcatcccctacatcaccaat
gtgctgcagaacccagacctggccctgcgcatggccgtccgtaacaacctggccggggcc
gaggagctgttcgcgcgcaagttcaacaacctgtttgccggcggaaactactctgaagct
gccaaggtggccgccaacgcaccaaagggcatcctgcgtactccagacaccatccgtaag
ttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtccta
cagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggagtgttct
gaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctacctg
agggccaatgtacccaacaaggtcatccagtgcttcgctgagaccggacagttccccaag
atagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgaggaac
gtgatgaggatcagtccagaacagggcctgcagttctcccagatgctggtccaggacgag
gagcctctggctgacatcacacagatcgtggatgtctttatggagtataacctgatccag
cagtgtacctccttcctattggacgccctgaaaaacaacaggccttctgaggggccgctg
cagacacgccttctggagatgaacctcatgcacgccccacaggttgctgatgccatcctg
ggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaaggct
ggtctgctgcagagagctttagagcactacactgacttgtacgacatcaaacgggccgtg
gtgcacacacaccttctcaacccagagtggctggtgaacttctttggctccctctcagtg
gaggactctctggagtgcctgagggccatgttgtctgccaacatccgtcagaacctgcag
atctgtgtccaggtggcttccaagtaccacgagcagctctccaccaactctctaacggag
ctcttcgagtccttcaagagtttcgagggtctgttctacttcctgggttccattgttaac
ttcagccaggacctagaggtccacttcaagtacatccaggcagcctgcaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtcaag
aacttcctcaaggaggccaagctgaccgaccagctcccactcatcattgtgtgtgaccgc
ttcgactttgtccatgacctggtcctctacctgtaccgtaacaacctgcagaaatacatt
gagatctatgtgcagaaagtgaaccccagccgtctaccagtggtgattggagggcttctg
gacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacagttc
tccactgatgaactggtggctgaggtggagaagaggaaccgactgaagcttctcctcccc
tggctggaggcccgtatccatgagggctgtgaggagcccgctacccacaatgccctggcc
aagatctacatcgacagcaacaacaaccccgagcgcttcctgcgtgagaacccctactac
gacagccgcgtggtgggcaagtactgcgagaagagggacccccacctggcctgcgttgcc
tacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctgttc
aagagtctgtctcgctacctggtccgtcgcagagacccggacctgtgggccagcgtgctg
ctggagagcaaccccttcagaagaccactcattgaccaggtggtgcagacagccctgtct
gagacccaggacccagaggaggtgtcagtcacagtaaaggccttcatgactgcagacttg
cccaacgaactcattgagctgttggagaagatcgtactggataactctgtcttcagtgaa
cacagaaacctgcagaacctgctgatcttgacggccatcaaggcagaccggacccgtgtg
atggagtacatcaaccgcctggacaactatgacgccccagacattgccaacattgccatc
agcaacgagctcttcgaggaggcctttgctatcttcaggaagtttgacgtcaacacctct
gccgtgcaggttctcattgagcacattgggaatctggatcgagcctatgagtttgccgag
cgctgcaacgagccagctgtgtggagccagctggccaaggctcagctgcagaagggcctg
gtcaaggaggctatcgactcctacatcaaggctgacgacccctctgcctacatggaggtg
gtacaggccgccgaccagagtggtaactgggaggacctggtgaagttccttcagatggcc
cgtaagaaggcccgggagtcctacgtggagacagagctcatcttcgccctggccaagacc
aaccgcctggctgagctggaggagttcatcaatggacccaacaacgcccacatccaacag
gtcggcgaccgctgttacgacgagaaaatgtacgatgcggccaagttactgtacaacaac
gtgtccaactttggccgtctggcgtccaccctggtgcacctcggggagtaccaggcggct
gtggacggggcccgcaaggccaacagcactaggacctggaaggaggtgtgctttgcctgc
gtggatggaaaggagttccggctggcacagatgtgtggcctccacatcgtggtgcatgct
gacgaactggaggagcttatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctggggctggaacgggcgcacatgggtatgttcaccgagctg
gccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggttctgcgggcggcggaggaggcccacctgtgggcggag
ctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcaccatgatgaac
caccccaccgacgcctggaaggagggccagttcaaagacatcatcaccaaggtggccaac
gtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactgaat
gacttgctcatagtgctgtcccccagactggaccactcccgtgctgtcaacttcttcagc
aaggtgaaacagctgcccctggtcaagccctacctgcgctctgtacagaaccacaacaac
aagtctgtcaatgaagcacttaccaacctcttcatcacagaggaggactatcaggctctg
aggacctctatagatgcctatgacaactttgacaacatctcgcttgcccagcgcttggag
aaacacgagctgattgagttcaggaggatcgctgcctacctcttcaagggaaacaaccgc
tggaaacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgcagtac
gcgtcagagtccaaggatacagagttggctgaggagctactgggctggttcctgaccgag
gacaaaaaggagtgctttgccgcctgcctcttcacctgttatgacctgctgaggccagac
gtggtgctggagacggcctggaagcacaacatcatggacttctccatgccctacttcatc
caggtcatgagagagtatctcttcaaggttgatgcaattaaggaaaaggtggacaagctg
gagacctcggagtccctaaggaaagaagaggagcaggcgacagagacacaacccatcgtc
tatggcacaccccagcttatgctgactgctggcccaagcgtgcccgtgcccccccagcag
gcctatggctacggttaccaggctcctgcaggctacccccaggcacctcaggcccaacca
ggctttggctacggcatgtaa
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integrated database retrieval system
