Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418295
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Entry
139418295 CDS
T10872
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139418295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139418295
03036 Chromosome and associated proteins [BR:
ocla03036
]
139418295
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139418295
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
139418295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
139418295
NCBI-ProteinID:
XP_071023753
LinkDB
All DBs
Position
10:33440790..33468165
Genome browser
AA seq
1809 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAASGTTTSLFGSTSTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTASSGGLFGATNSNPFGGASTSLFGASGFTQQAAQPGT
TVKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMA
APTGGLFGAAAAATPSTGATGLFGSSATNTGFSFGQAKTSFGTSAGGFGAATGSLFGQQQ
PQQVQQAVSLFKPFGQATTTPNTGFSFGSTMGQPQQTSTMGGLFGATAVSQAGGLFGNTA
QTAPATGFGTGTGLFGQTNTAFGNVGTQQGLFGNKTAGFGVTTTSTPSFGTGTGLFGNKA
ALSLGTATNTSNFGFGPTAAGGSLFGNKTAAGGLGTGLGASFGAAVGSGQMSLFGNNKTL
GSTLGTMGGFGVQGFSTGNSTLGFGAPQQPVAVTDPNAVAAQQAVLQQQINALAYSPFGD
SPLFRNPLSDPKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQL
FDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLGA
SVDEDDDVREVVEGGAENNLEIKFYAKPNLQDTISELNAHRMGAGGRNGLEVSSEDISLG
DDSIQEERVEGPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYGSVF
FHGEVNVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVWPNDKTTCTQ
IKSPERLSEMNYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDEEVPL
KLDPKKLKTATRLPPGLLPPSQQQVAPQAQSTAVLELLNRMSEVDSDMADITQDAPGESM
LEEGESGMWEKGSRLGNVTPSEHDSVSVSSQIASSLGINPHTLQIMKASLFAEADDGDMF
QEQGGMTSSLDVASPRIHLPGTQGRPSIGGLLQTRFSGAGLFQLPDVPFGGGLPGRLSMS
RVSPAVPEPSRVSPWPSFLLLAPPAEATVRTVGARRLGGPVDPENSVTLGKGRLLMDAAL
FTGRSFRVGWGPGWTLVHCGDGLSVAGDKEQDHGDTGAAGFGFLPKPAKSRLLSDSPFKV
VIEQVVGLELRNSEESQAVYQRPLEISLKHSSISTEGSCPFIQPQSGVAALHEYAEWITD
LNQEAGAGDAVLGHWAQVWTLCEALWGRRCLAGPGTSGYLQQMERRRSFSAWLSHSATQR
IEQEVGLNQGGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGRELLAL
QLGDWNRMQTDSFLPEERLRIFALLAGKPVWQSTDCVVNVCSELDWKRCMAVHLWYMLPP
TASIAEALVKYEAAFQGSAEGQKYACAPLPPYLDQSDQPDMEEEESKRPLYDICFHLLKL
YSDRHYSLQQLLDPLAVTWDRLDYRLSWHLWSVMQALHYTHLSPARQGLIHTSYAAQLES
AGLWDMAIYVLLHIPDNTLRERAVRAMLQLHCPLLETEESAKKEHFLTERLLVPEQWLHQ
AKATRARRDTDSHGEALHLYRAGHWNLCHSLVIQHLASDCIINDNHEYLLKFLEGLAVPE
RSAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDITGYELECLHTEARSLCSRIELLPCSTA
KDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLASNIGRLPMPEDYALEELRSLTQ
SYLRQLIVS
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttgggggagggactggaggatttgggacgtca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcgaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtaccttcagccagcctgtgacatcatctaccagtagcggctttggctttggcgcg
gccagcggcactaccaccagcctgttcggcagcaccagcacaggcggcggcggagggctc
ttctcccagcagagcaatgccttcggcgccgccaagccagcctcttttggcacgttcggt
acgagcacggccagcagtggggggctgtttggggcaaccaactccaaccctttcggaggg
gcgtctacctccctgttcggagcatcagggtttacccagcaggctgcccagccaggcacc
actgtcaagttcaaccctccaacaggaagtgacaccatggtgaaagggggtgtgacgaca
agcatcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggct
gcaccaacagggggtctctttggggctgcagccgcagccacccccagtacaggggctaca
gggctgtttggctcctcagccactaacacaggcttctccttcggccaggccaaaacctcc
ttcggaactagtgcgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggtccagcaggcagtcagcctgttcaagcccttcggccaggccacgaccacc
cccaacacaggcttctccttcggcagcaccatgggccagccccaacaaaccagcaccatg
gggggtctgtttggggccacggcagtgtcccaggcaggggggttgtttggaaacacagct
cagaccgcaccagctacgggctttgggacaggcaccggactctttggacaaaccaacacc
gctttcggcaacgtcggcacacagcagggcttgtttggtaataaaacggcagggtttggt
gttaccaccaccagcaccccgtcgtttggcacaggcaccggcctcttcggcaacaaagct
gccctctctctcggaacagctaccaacacatccaactttggttttggacccactgctgct
ggcggaagcctttttgggaacaagactgcagcaggaggactagggaccgggctgggagcc
agctttggagcagcagtaggttctggccagatgtctctgtttgggaataacaagacgttg
ggttccactctgggaacaatgggaggttttggagtgcagggattcagcacaggaaacagc
actctgggcttcggagcgccacaacagcccgttgcggtgacggaccctaacgcggtggcg
gcccagcaggcagtgctgcagcagcagatcaatgctctggcctactcccccttcggagac
tcccccctcttcagaaaccccctctctgatcccaagaagaaggaggagcgtctgaagccc
accaatccggtggcccagaaggcattgaccacaccaacccactacaaactgacaccgcga
cctgcgacacgtgtgcggccgaaagctctgacatcatcgggctcctccaagtcccagctg
tttgatgggttggatgacgacgagccttctctcactaacggtgccttcatgcccaggaag
agcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagcagcccaatc
aacagagattccgacgacctatcttctccaccagagtaccccctcaacggactcggtgcc
agtgtggacgaggatgatgatgtgagggaggtggtggagggaggagccgagaacaacctg
gagatcaagttctacgccaagcccaacctacaggacaccatctcagagctcaatgcccat
aggatgggggctgggggcaggaacgggcttgaggtgagcagcgaggacatatcgctggga
gatgactccatacaggaggagcgagtggagggccccccccaccctgcaggtatcgttctg
ggccgtgtgggctactacaccatccctgccatggacgagctggccaaaatggtggacgaa
aacggggtgtgtgtggtggaaaacttcaccgtgggcagaaaaggttacggctccgtgttc
tttcatggtgaggtgaacgtgactgggctgaacctggatgagattgtccacttcagacgt
aaagaggtcatcgtctacctcgacgacaagaacaagcccgctgagggggaggggctcaac
aggcgagcagaggtgactctggatggggtgtggcctaatgataagaccacctgtactcaa
ataaagagccctgagcgtctgtctgagatgaactacgagggccgcctggagaatgcctca
cgcaaacagggcgcccgcttcctcgagtaccgctccgagacggggtcctgggtgtttgag
gtggcccatttctctaagtacggcctgcaggactctgacgaggatgaggaagtccctctc
aaattggaccccaagaagctgaagacggcaacaagacttccaccagggctgctgcctccc
tcccagcagcaggtggcaccacaggctcagtcgacagcagtgctggagctgctgaatcgc
atgtcggaggtggacagtgatatggccgacattacccaggatgccccaggggagagcatg
ttggaggaaggggagagtggcatgtgggagaagggaagtcggctggggaatgtgacccct
tcggaacacgactctgtctcagtgtccagtcagatcgcctcctcgctggggatcaaccct
cacacactacagattatgaaggcatccctgtttgctgaggccgatgatggtgacatgttc
caggagcagggagggatgacaagttctctagatgtggcctctcctcgcatccacctgcct
ggcacgcagggtaggccctccatcggtggtctcctgcagactcgtttcagcggtgctggt
ctctttcagctccctgacgtgcccttcggtgggggccttcccggcaggctgtccatgtct
cgggtgtcgccggcggttcctgagccatcgcgggtctccccctggccctcttttcttttg
ctagccccaccggccgaggccactgtacggacagtaggggctcggcgcctggggggacct
gtggacccagagaactcagtcacactggggaagggccgtcttctgatggatgcggctttg
ttcacgggccggtcatttcgggtgggctggggtcctggctggactctggtccactgtgga
gatgggctaagtgtggccggggacaaggagcaggaccacggagacacaggagctgcaggc
tttggattcctgcccaaacctgccaagagtagactactgtcagacagtccattcaaggtg
gtgattgagcaggtggttggtctggagctgcggaacagtgaggagagccaagcggtgtac
cagcggcccctggagatcagcctgaagcacagcagcattagtacagagggttcctgcccc
ttcatccagccccagagcggtgtggccgccctgcacgagtatgcagagtggattactgac
ctcaaccaggaggctggtgctggagatgcagtcctgggtcactgggctcaggtgtggact
ctgtgtgaggccctgtggggccgacggtgtttggcagggcctggtaccagtggctacctg
cagcagatggagaggagaaggagcttctcagcctggctgtcccatagtgccacccagagg
atcgagcaggaagtgggcctgaaccaggggggaggaaacgtggaggccatctttagctac
ctgactggacaccggatcagtgacgcctgcaggctggctcagaagagtggggaccaccgt
ctctccctgctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcactg
cagcttggagactggaacaggatgcagacagactctttcctgccggaggagaggctacgg
atctttgcccttctcgctgggaaacctgtgtggcagtctacagactgtgtggtgaatgtg
tgttcagaactggactggaagcgttgtatggcggtccacctgtggtacatgctgcctccc
accgcctccattgctgaagccctggtgaagtacgaggctgccttccagggctctgctgag
ggtcagaagtatgcctgcgccccacttcccccctacctcgaccaatcagaccagccggac
atggaggaggaagagtctaaacggccgctttacgatatctgcttccacctgctcaaactc
tacagcgacaggcactacagcctgcaacagttgttggaccccctggcggtgacgtgggat
cgtcttgactaccgtctgagctggcacctgtggtcggtcatgcaggcgctgcactacaca
cacctcagcccggcccgacagggcctcatacacaccagctatgctgcccaactggagagt
gctggcctctgggacatggctatctacgtactgctgcacatacctgacaacacgctgcgt
gagcgggcggtgagggcgatgctgcagctgcactgccccctgctggagacggaggagtct
gccaagaaagagcactttctcacagagagactactggtcccagaacagtggctccaccag
gccaaagctaccagagccagaagagacacagacagccacggagaggcccttcacctgtac
agagcaggacactggaacctctgccacagtctggtcatacagcaccttgcctcagattgc
atcattaatgataatcatgagtacctcttgaagttcctggaggggcttgcagttcctgag
cgcagtgctgtgatccaggactgggacacggcgggcagagtctacctggactacatcaga
gtcatacagaccctacacgccatacaacagatggacattactggttatgagctggagtgt
ctacacactgaggcgaggtcactctgcagcaggatagagctcctcccttgctccaccgcc
aaggaccgcctcgcccaatcagagatggccaagcgtgtggctaacatcctgcgtgtggtg
ttgagtctgcagcagggtggtgagggtggcgagatccccttgtcccagcttgcgtccaac
atcggccgtctgcccatgcccgaggactatgctctcgaggagctccgcagtctcacccaa
tcatatctgagacagctcattgtcagctaa
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