Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418352
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Entry
139418352 CDS
T10872
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139418352
09122 Translation
03013 Nucleocytoplasmic transport
139418352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139418352
03041 Spliceosome [BR:
ocla03041
]
139418352
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
139418352
Spliceosome [BR:
ocla03041
]
Complex C
Other components
EJC/TREX
139418352
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139418352
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
139418352
NCBI-ProteinID:
XP_071023842
LinkDB
All DBs
Position
10:complement(35317579..35389706)
Genome browser
AA seq
1586 aa
AA seq
DB search
MCGILGKMATLILPADWIKNWEKSGKHEFVQLCKNLADKTNHDSIIKDIQAALYELCWHV
VQGNFKLDLAASVLSDTMELRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLL
FVPDAILKERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLI
TELGQDLSGNITSHVVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYM
CEPLTLCHILGFKFKFNQEPNEETPTSLYHIAAALLHHKLIELEDLYVHLMPLDASIVEE
HKREITEAKQIARKLTMVVVPSEKMEDKEREKEKEEEKNDKPPDNQKLGLLEALLRIGDW
HHAQSIMDQMPAFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCVMRPLRNKRAP
RPAESFEDLRRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQNEARNDHIKDKMDT
LLSCFLSIADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLL
VKVKAQTVDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVV
DSLKYLTSLNYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELA
GLLQYVTNTLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQ
IRNTKKSSQRLKDALLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLV
QFGGFLASNLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEK
SNRQQQKVHKYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNA
YDREVKKLQVQVKTIEENPDVPMNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKL
EKDNWLLAKSTKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKAPNFCTLLCYD
RVFSDIIYTVASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATG
FDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVL
NLGQALECRVHKICLEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATT
ASQLNGPGTTAKPATNASKTEEACEDADRSKDKSQGATKPVNKANSTVAKVTTSNGNGAP
NSTKAIKERDDKEKSGKEKKEKKEKTPGSTPETKGESRREKQRDERGAAGKEERAPREGK
EKTPKADRDKQKAEEKSNKEDNKAKAGNGEPKELSRERDTGAKESKTKEKGGDQSKEKGG
DRSAVSGSLKSPAPRSESAESERDHKRRKVDTHSSPSHSSSVKDNSNEPKDSASKHHITY
NSVSRSKSRERETDQKESENTRGRSKEKKTEDKDRKDRKRDHVTTDREMSLESKRRKDEN
GTNSSNKHSKSASPSSDSPVSADKEKTKRSKSSSKEKGESTKPERNSSGGKKESRHDKDK
PDKKEKRDSSGGKEEKKHHKSSDKHR
NT seq
4761 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggtattttggggaagatggcgacacttatcctgcctgctgattggatcaaaaac
tgggaaaaatctggaaaacacgagtttgtacaactatgtaagaatcttgcagacaaaacc
aatcatgacagcataataaaagatatacaggctgctttgtatgaactctgctggcatgtc
gtacaagggaacttcaagctggaccttgctgctagcgtcctcagtgacacgatggaactg
cgcgatgacatgccatccattttagcagatgttttcagtatactggacatagagaccagt
tctttggaagaaaaaaacaaacgcgaccattacacccagctagtgggagcatgtctgtta
tttgtgccagatgccatcctgaaggagagactggacccagagaccctggagtccctagga
ctcataaagcaagcccatcagttcaaccagaaaatcgtcaaaatcaagaccaagctattt
tacaagcagcagaagttcaacttgctaagggaagagaatgagggctatgccaagctgatc
actgagctgggccaagacctctcaggcaacatcactagccacgtcgtcctagagagcatc
aagtccctgataggatgcttcaacctggaccccaaccgcgttctggacatcatcctggag
gtgtacgagtgtcgctctgaccaggatgagttcttcctgcccctcatcaagtcctacatg
tgtgaacccctcaccctctgccacatcctgggcttcaagttcaagttcaaccaggagcct
aatgaagagacccctacttcactctaccacattgctgccgcccttctccaccacaaactc
atagagctggaggacctctatgtgcatctgatgccactggatgccagcattgtagaggag
cacaagagagagatcacggaggccaagcagatcgcccgcaagctcaccatggtggtggtg
ccctccgagaagatggaggacaaggagagagagaaagagaaagaggaggagaagaacgac
aagcctcctgataaccagaagctgggcctgctggaagcgctgctgaggatcggagactgg
caccatgcccagagcattatggaccagatgcctgccttctacgccacctctcacaaggcc
atcgccctggcactgtgccagctgctgcacctgactgtggagccgctgtaccgcagagcc
ggggttcccaaaggggccaagggctgtgtgatgaggcccctgaggaacaagcgggcccca
aggcctgccgagagctttgaggacttacgtagagacgtgttcagcatgctctgctacctg
gggcctcacctctcccacgaccccatcctctttgccaagatagtacgactgggcaagggc
ttcatgaaagagtaccaaaatgaggctagaaatgaccacatcaaggacaaaatggacacg
ttgctgagttgtttcctgagcattgcagaccaggtgctgctgccctcgctctctctaatg
gagtgtaacgcctgcatgtcagaagaactctggggcctcttcaaactgttcccttaccag
cacaggtaccggctatacgggcagtggaagaacgagacgtacaccagccacccactgctg
gtcaaggtcaaagctcagactgtggacagagctaaatacatcatgaagcgattgaccaaa
gagaatgtgaaaccatctgggcggcagataggcaagctgagccatagcaaccccaccatc
ctctttgactatatcctgtctcagatccagtggtatgacaacctcatcggtccagtggta
gactccctcaagtacctcacctcactcaactatgatgtcatggcctattgcattattgaa
gcgctggccaatccagagaaagagaagatgaaacatgatgacactacgatatcctcctgg
cttcagagcctggctagtctgtgtggagcggttttcaggaaatacccaatcgagttggcc
ggcctcctccagtatgtgaccaatacgctgaaagcagggaagagttttgacctgctgatt
ctaaaagaggtggtgcagaagatggccggcatcgagatcacggatgagatgacatcagag
cagatggaggctatgactggaggggagcagctcaaagctgagggtggttactttggtcag
atccgtaacactaagaagtcgtcccagcgtctaaaggatgccctgttggaccatgagctg
gctctgcccctctgtctcctcatggcccagcaacgcaacggggtggtctttctggagggg
ggcgagaaacacctcaaactggtgggaaagctctacgaccagtgtcacgacaccctggtc
cagtttggtggcttcctggcgtccaacctgagtactgaggactacatcaagcgtgttccc
tctattgacatcctgtgcaaccagttccacacgccccacgacgctgccttcttcctctca
cgcccaatgtacggacatcagatcctgtctaagtatgatgagctgaagaaagctgagaag
agcaaccggcagcagcagaaggtccataagtacgtggctgcgtgcgagctggtgatgtcg
ccggtgcatgaggctgtggtgtccctgcacccgccccgcgtctgggacgacctccgaccc
cagttctacgccaccttctggtcgctgaccatgtacgacctggccgtgccacacaacgcc
tacgaccgcgaggtgaagaagctccaggtccaggtcaagaccatcgaggagaaccctgat
gtgcccatgaacaagaagaagaaggagaaggagcgctgcacggccctacaggacaagctg
caggaggaggagaagaagcagctggagcacgtccagagggtcctgcaccgcctcaaactg
gagaaagacaactggctcctcgccaaatccaccaagaatgagaccatcactaagttcctg
cagctgtgtctgttccctcgctgtatcttctctgccatcgacgctgtgtactgcgcccgc
tttgtggagctggtgcaccagcagaaggctcccaacttctgcacactgctctgctatgac
cgggtgttctctgacatcatctacacggtggccagctgcacagagaacgagtcgcggcgc
tacggacgtttcctgtgctgcatgctggagactgtgacccgctggcacagcgaccgtgct
gtctacgagaaggagtgtggtaactacccaggcttcctgaccatcttcagagccacaggc
ttcgacggagggaacaaagccgaccagctggactatgagaacttcagacacgtggtgcac
aaatggcactacaagctgactaaagcatcagtccactgcttggagacgggggagtacacc
cacatccggaacatcctcatcgtgctgaccaagatcctgccttgttaccccaaagtgctg
aacctgggccaggcgctggagtgccgcgtccacaagatctgtctggaggagaaggagaag
aggccagacctctatgccttggctatgggctattctggccagttgaaaggcaggaaagtg
cacatggtccctgagaatgagttccaccacaaggagcagccggtgcgtagcgccaccact
gccagccagctgaacggccctggcaccacagcaaagcctgccaccaacgccagcaagacg
gaggaggcctgcgaggacgctgaccgatccaaggataaatctcagggggcgacgaagcca
gtgaacaaagccaacagcacagtggccaaagtgaccaccagcaatgggaatggtgctcct
aacagcaccaaagccatcaaagagagggatgacaaagaaaagagtgggaaggagaaaaaa
gagaagaaggagaagactccaggcagcactccagagacgaagggggagagccggagggag
aagcagagggacgagagaggagcagccggcaaggaggagcgggcgccacgcgagggtaag
gagaagacgcccaaggcagaccgggacaagcagaaggcggaggagaagagcaacaaagag
gacaacaaggccaaggccggcaacggagagcccaaggagctgtccagggagcgcgacact
ggagccaaggagtccaagactaaggagaagggaggagaccagagtaaggagaagggagga
gacaggagtgctgtgtccgggtccctcaagtctccagctccccgatctgaatctgctgaa
tctgagcgggatcacaaaaggcgaaaagtcgatacccactcttcaccatcccactcttcc
tctgttaaggacaatagcaacgaacccaaggactctgcatccaagcaccacatcacctac
aattcggtctcacggtccaagagcagagagagggagacggaccagaaagagtcagagaat
acccggggccgttccaaagagaagaagaccgaagacaaagaccgaaaggacaggaagaga
gaccatgtgaccactgaccgtgagatgagcctagaatccaaacgcagaaaagatgaaaat
ggaaccaattcctccaacaaacacagcaagagcgccagtccctcctcagactccccggtc
tcggctgacaaagagaagaccaagaggtccaagtcctccagcaaggaaaagggagagtct
actaaacctgagagaaactcttccgggggcaagaaggagtctaggcatgacaaagacaaa
cctgacaagaaggagaagagggacagcagcggcggaaaggaagagaaaaaacatcataag
tcctccgacaagcacagataa
DBGET
integrated database retrieval system
