Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418354
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Entry
139418354 CDS
T10872
Name
(RefSeq) cohesin subunit SA-2-like isoform X1
KO
K06671
cohesin complex subunit SA-1/2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
139418354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139418354
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
139418354
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
HEAT_SCC3-SA
STAG
SCD
Motif
Other DBs
NCBI-GeneID:
139418354
NCBI-ProteinID:
XP_071023844
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All DBs
Position
10:complement(35392058..35413244)
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AA seq
1272 aa
AA seq
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MIAAQELHTEFQFPQEADTQLSSDTDLEDPDVKNAKLGKGKAGKKGKKAPGEKGKGGAAK
GAGLGRVNGHHQENGMENMTLFEVVKMGRSATQSVVDDWIESYKNDRDIALLDLINFFIQ
CSGCKGAVSAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPLWKKFKSSFCEFIGVLV
RQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDN
TQRQYEAERNKVMAKRANDRLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAE
IRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNRELNTR
LELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLHSSDEVLTAEDCESVYHLVYSAHRP
VAVAAGEFLYKKLFSHRGPEEEGMPRRGRQSVNGNLIKTTVFFFLESELHEHGAYLVDSL
WECAGELLKDWESMISLLLDEPMPGEEALTDHQETALIEIMLCAIRQACECHPPVGRGTG
KRVLTAKEKKTQLDDRTRITEIFAVALPLLLAKYSVDAEKVTNLLQLPQFFDLEIYTTGR
LEKHLESLLRQIREVVEKHTETDVLEACSMTYHALCNEEFTIFNRVDIARSQLLDELVDK
FNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFTSNYKLLNTGLQNGD
MPEQIVIHAMQCTHYVILWHLAKVSEGSSTKADMVTLRKQMRGFCLMCQSYLTSVNTTVK
EQAFTILCDALMIFSHQIVSSSREQLEALIYTPDSSLQAELLNFILDHVFIDQDDDNNST
DGQNDDEASKIEALHKRRNLLAAYCKLIIYNVVEMNTGADIFKQYMRYYNDYGDIIKETM
SKTRQIDKIQCAKTLILSLQQLFNEMLSDLGCNFDRSSSSFCGIKELARRFSLTFGLDQL
KTREAIAMLHKDGIEFAFKEPSPQGEGNPPLNLAFLDILSEFSSKLLRQDKKTVHLYLER
FMTFQMALQREDCWLPLISYRNSLQAGGDDDTMSVISGYSSRGSSIRSKKAKPASTGKRK
LPEEESSSCSTDAVWMNREQNVQTPVMMPSPHLSSTVLRDPKKMRPEESYMGVYSITSEQ
QQQQPLPPQQQHHQTPMDYNTQVTWMLAQRQQAEARQQQERASMQYAKMRSHMQHAIRRS
SGLMEDDEEPIVEDVMMSSEDRLEDLNEGMDFDTMDIDLPPSKNRRERSELKPDYFDPSS
IMDDSVLNVSMF
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgatagcagcacaggagttgcacacagagtttcagtttcctcaggaggctgatacacag
ttgtcctctgacacagaccttgaggaccctgatgtcaaaaatgcaaagcttgggaaagga
aaggcgggtaagaaggggaagaaagcccctggagagaagggaaagggtggggcagcgaag
ggtgctggccttggccgggtgaatggtcaccaccaggagaatgggatggagaacatgacc
ctgtttgaggtggtgaaaatggggaggagtgccacgcagtctgtcgttgatgactggatt
gagtcttacaagaacgatcgagacattgcactcctggacttgatcaacttcttcatccag
tgctccggctgtaaaggtgctgtcagtgcagagatgttcaggcacatgcaaaactctgaa
ataatcaggaagatgactgaggagtttgacgaggacagcggggactacccgttaaccatg
gcagggccactgtggaagaagttcaagtcgagcttctgtgagtttatcggggtgctggtg
cggcagtgtcagtacagcatcatctatgatgagtacatgatggacacggttatctcgctg
ctcacgggcctgtctgactcacaggtccgagccttcagacacaccagcaccctggcagcc
atgaagttgatgaccgccttggtgaacgtggctctgaacctgagcatcaacatggacaac
actcagaggcagtacgaggcagagaggaacaaggtcatggccaagagggccaatgatagg
ctggagctccttttacagaagcgtaaagagcttcaagaaaatcaagacgaaattgaaaac
atgatgaatgcgattttcaaaggagtgtttgttcacagatatcgtgatgccatagctgaa
atccgtgcaatctgcattgaggagattggggtatggatgaagatgtacagcgatgctttt
ctcaatgacagttatctgaagtatgtcggatggaccatgcatgacaagcaaggtgaagtg
cgtctcaagtgtctgactgcgctccagggcctgtactataaccgggagctcaacactcgg
ctggagcttttcaccagccgcttcaaggaccgcattgtgtcgatgactctggataaggag
tatgatgttgcagtgcaagccataaaacttctgactcttgtcttgcatagcagtgatgag
gtcctgacagcagaggactgtgagagtgtctaccatctggtctactctgctcatcgacct
gtggctgtggctgcaggagagttcctctataagaagcttttcagccatcgaggtccagag
gaggaagggatgcccaggaggggcaggcagagcgtcaacgggaacctcatcaagaccacc
gtcttcttcttcctggagagtgagctccatgagcacggggcctacctggtggacagtctg
tgggagtgtgcaggggagctgctaaaagactgggagagcatgatcagcctgctgctggat
gagcccatgccaggggaggaggccctgactgaccaccaggagactgctctgatagagatc
atgctgtgtgccatccgccaggcctgtgagtgccaccctccagtgggcagaggcacagga
aagagggtcttgacagcgaaggagaagaaaacccagctggatgaccggacgagaatcact
gagattttcgctgtggcgttgcctctgttgttggctaagtactctgttgatgctgagaag
gtgaccaacttactgcagctgccgcagttctttgacctggaaatctacaccactggtcga
ttggaaaagcacttggagtcgttgctgcgtcagatcagggaggtggtggagaagcacaca
gagactgacgtgctggaggcgtgctccatgacctaccacgctctctgcaacgaggagttc
accatcttcaacagggtggacattgccaggtcccagctactggacgagctggtggacaag
ttcaacagactcctggaggacttcctacaagagggtgaggaaccagatgaggatgatgcc
taccaggtcctgtccacactgaagaggatcactgcgttccacaatgcgcatgacctctct
aaatgggacctgttcaccagcaactataagctattaaacacaggacttcagaatggtgat
atgcctgagcagattgtcattcatgccatgcagtgcacacactatgtcatcctgtggcac
ctagccaaggtttcagagggcagctccacaaaggcggacatggtgaccctgaggaagcag
atgaggggtttctgtctgatgtgccagagctacctcaccagtgtcaacaccaccgtcaaa
gagcaggccttcaccatcctgtgtgacgccctgatgatcttcagccaccagattgtgtcg
tcgagccgggagcagctggaggctctgatctacacgccagactcctccctgcaggccgag
ctgctcaacttcatcctggaccacgtcttcatcgaccaggacgacgacaacaacagcaca
gatgggcagaatgatgatgaagccagtaaaatcgaggctttacacaagaggcggaacctg
ctggcagcgtactgcaaactgatcatttacaatgtagtggagatgaacactggagctgat
atcttcaagcagtacatgaggtactacaacgactatggagatatcatcaaggaaacgatg
agtaaaacaagacaaattgacaagatccagtgtgccaagaccctcattctgagtttgcag
cagcttttcaatgagatgttatctgacctcggctgcaactttgaccgctcgtcgtcgtcc
ttctgcggcattaaagaactggcccgacgtttctcgttgacctttggcctggatcagctg
aagaccagagaggctatcgccatgttacacaaggatggaatcgagtttgccttcaaggag
cccagtccccagggagagggaaaccctcctctcaacctagccttcctggacattctcagc
gagttctcctctaaactgctgcgtcaggacaagaagactgttcacctctacctggagcgg
tttatgaccttccagatggccttgcagcgagaggactgctggctgcccctcatctcctac
aggaactccctgcaggccggaggggacgacgacaccatgtccgtcatcagcggctacagc
agccgaggttccagcatcaggagcaagaaggctaagccagccagcaccgggaagaggaaa
ctgcctgaagaggagagtagcagctgcagtacagacgctgtgtggatgaaccgggagcag
aatgtgcaaacgccagtgatgatgccctcgcctcatctcagctccactgtgctgagggac
cccaagaaaatgaggccggaggagagttacatgggcgtctacagcataacatccgagcag
cagcagcagcaaccgctgcccccccagcagcagcaccatcagacccccatggactacaat
acccaggtgacctggatgctagcccagagacagcaggcagaggcccggcagcagcaggag
cgagccagcatgcagtatgccaagatgagaagccacatgcagcatgcaatccgccgcagt
tcaggactcatggaggacgatgaggagccaatagtagaggatgtaatgatgtcatcagag
gaccgtttggaagatctcaacgagggcatggatttcgacactatggatattgatctgcca
ccatcgaaaaatcgtagagagagatcggagctgaagcctgactactttgacccttcttcc
atcatggatgattcggtcctcaatgtttcaatgttctaa
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