Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418422
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Entry
139418422 CDS
T10872
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139418422
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
139418422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
KH_N4BP1_1st
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
139418422
NCBI-ProteinID:
XP_071023932
LinkDB
All DBs
Position
10:37271565..37294360
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AA seq
971 aa
AA seq
DB search
MVLELAVPANAGPLLHRSIPHIERIFRVRVSYGSAESSCDSANVSTSNIIIVRVAEGKED
DCTKAKDYIVSLTSPAHRKREHLTSAQHKQLVVLKPVIEYDSQAVVEVREHVVDISGGER
NVMTAWSMVEKIKMEKHPCREEASELTEAQQPSGESEEGNSSESESEHQLQVNSGSCKRT
ELFSATKPHRQLCRSPCLDRPSFSQSSTLPELRPDDTKAAAVLKQASDKVYQTKMEFALK
LGYSGEQVETVLNKLGAAALINDILAELVRLGNKGELEVQASSNTGTLVSRGGPCVKEAV
SPEVSLEDDSVDPYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFVEKGHKDITVF
VPAWRKEQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACDSDG
IIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVV
PEHKKQPCPYGKKCTYGHKCKYYHPERANQPQRSVADELRAFAKLSAVKTMSEGALAKCG
TGLATAKGESGSEAKRVTPKRQSDPSIRSVACEPEERLSAVRKPEANSVPSLVSALSVPT
MQPAKSHAAGALNTRSASSPVPGSLQFTHSSLEHMSSVQYPHPPILVTNSHGASVTYSEQ
FPKYDSVSTDHGYYSMLSDFSNMSMSSMHNVDSFCSMEHEHGVYLRNPSQHCPEPCLSHS
NSDSFSSYGELYMSSVDSSLDESMKGQQSPAQSRLQASSHGGFHHEALTRVQSYGHEEPK
QGPCRKQSISHLAPHVQHPVVGARSSCPGDYPLPQNVLPSQSSQPGRSLGMTRMDSISDS
RLYESNPMRQRRPPLCREQHASWDPLPCGSESYGYHSYPLSNSLMQPCCERVMVRSMPDK
MEQIWRSPWENPPQAEHQERHVIPEHLYQTYRNLCNIFPSFVVHSVMEKNPHLTDPQQLA
AVIVTKLRSCH
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctggcagtgcccgcaaatgcaggccctttgcttcaccgctccatcccg
cacattgagcgtattttccgggtgagggtcagctacggatccgcggagtcaagctgcgac
agcgcaaatgtcagcaccagcaatatcataatagtacgtgtcgcggagggaaaggaagat
gactgcaccaaggcaaaagattacatcgtttccttaacttcgccagctcaccgaaagaga
gagcatctaacgtcggctcaacacaaacagctggttgtgctgaagccagtcatcgagtat
gactctcaggctgtggtggaggtgagggagcatgtggtggacatctccggtggcgagagg
aacgtgatgacggcatggtcgatggtggagaagatcaaaatggagaaacacccttgcagg
gaagaggcctctgagctgactgaggcccagcagcccagtggggagtcggaggaggggaac
agctcagagagtgagtcagagcatcagctgcaagtgaacagcggcagctgtaagaggacg
gagctcttcagtgccaccaagcctcaccgtcagctctgtcgctctccatgcctggaccgg
cctagcttctcccagagcagtactctaccagagctccgccccgacgacaccaaggccgcc
gcagtcctcaaacaggccagtgacaaggtgtaccaaaccaagatggagtttgccttgaag
ctgggatactcaggtgaacaggtggagacggtgctgaacaagttaggggctgctgccctc
atcaatgatattctggctgagcttgtgaggcttggtaataaaggtgaactggaagttcaa
gccagcagtaacacaggcacgttggtctcccgtggaggcccctgtgtcaaagaggctgtc
agtccggaggtgtcacttgaagatgattccgtagatccttatgataatctcaggcctatt
gtcattgatggatcgaatgtggcaatgagccatggaaacaaagaggttttctcttgcctt
ggtatccaattggctgttgattggtttgtggagaaagggcacaaagacatcacagtgttt
gttcctgcctggaggaaagagcagtcgagacctgacgcccccattacagaccaagacatt
ttgcggaagctggagaaagaaaagatcctagtgttcaccccatctagaagagtccaaggg
aggagagtggtgtgctatgatgatcgctttatagtgaaactggcttgtgactctgatggc
ataattgtgtcaaatgacaactacagggacttacagaatgagaagccggagtggaagaag
ttcatagaggagcggctgctgatgtactcgtttgtcaatgataaattcatgccacctgat
gaccctttgggaagacacggtccaagtttagagaattttctccgcaagcgtcctgttgtt
ccagagcacaaaaagcaaccctgtccatatgggaaaaaatgcacttatggacataagtgc
aagtactaccatccagagcgtgcaaaccagccccaacggtcagtggctgatgaactgagg
gcatttgccaagttgtctgctgtgaagacaatgagcgagggggccctggccaagtgtggc
actggactcgccacagctaagggggagagtggctctgaggctaaacgagtgaccccaaag
cgccagtccgaccccagcatccgctcagtcgcctgcgagccagaggagagactgtccgct
gtccgtaagcctgaggcaaattctgtgccttcccttgtgtctgccctcagcgtgcccacc
atgcagcctgcaaagagccatgcggctggtgccttgaacacacgatcagccagcagccca
gtacccggctccctccagttcacccacagctctctggagcacatgtctagtgtacagtac
ccacatccacccatcctagtcaccaacagccatggcgcttctgtcacttacagtgaacag
tttcctaagtacgattctgtgagcacggaccacggatactactctatgcttagtgatttt
tctaacatgagcatgagcagcatgcacaacgtggacagcttctgtagcatggagcatgag
cacggggtttatctgagaaatcccagccagcattgccctgagccctgcctcagccactct
aacagtgactccttttcctcttatggggaattatacatgagctcagtggacagtagcctg
gatgagagcatgaagggacagcagtctccagcacagagcagactccaggcctcctcccat
ggggggttccaccacgaggccctgacccgggtgcagagctatggccatgaggagcccaag
caaggtccatgcaggaagcagtccatatcccacctggcaccgcatgtccagcaccctgtt
gttggggcccggtccagctgcccaggggactaccccttacctcagaatgtcctcccgtca
cagtcctcgcagccgggacgctccctgggcatgacacgtatggacagcatctcagactcc
aggctgtacgagagtaaccccatgaggcagcgcagacccccactatgccgcgagcagcat
gccagctgggacccgctgccctgcggcagtgagtcctatggataccattcgtaccccctg
agtaacagcctgatgcagccgtgttgtgagcgggtgatggtccgcagcatgcctgacaag
atggagcagatttggaggtctccgtgggagaacccgcctcaagccgagcaccaggagcgc
catgtcatcccagagcacctgtaccaaacataccgcaacctctgcaacatcttcccatct
ttcgtggtgcactctgtcatggagaaaaaccctcatctgacggacccacaacaactcgct
gccgtcattgtcacgaagctgaggtcttgccattga
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