KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418497
Entry
139418497         CDS       T10872                                 
Name
(RefSeq) period circadian protein homolog 1-like isoform X1
  KO
K21944  period circadian protein 1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139418497
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    139418497
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 139418497
NCBI-ProteinID: XP_071024116
LinkDB
Position
10:complement(42370230..42379153)
AA seq 1459 aa
MSDENANTTSGNDTSGVSLAEDAVAGQEAGSQSAESGLSQTGSSNGNGQRTRSGGKSSNS
DDTDAHLSGNDSAEREVEGHMGHEASTCSSSHNGKDSVMETTESKSSNSHSTSLPNSSMV
YSLLSGSSEQDHPSTSGCSSGQPSRLQTQRELLKALKELKIRMPADHRTKGRSSTLASLQ
YALNCVKQVRANQEYYHQWSVEESHGCSLDLSAFTTEELDNITSEYTLQNTDTFSVGVSF
LSGKVVYISPQASPMLRTKPERLQGALFSELLAPQDVSTFYSSTAPCRLPPWASCTGSMT
SPVDCTQEKSMFCRISGGRDSEGEVRYYPFRMTPYQLTLRDSDMSQPQPCCLLIAEKVHS
GYEAPRIPADKRIFTTSHTPSCLFQEVDERAVALLGYLPQDLVGTPVLMYLHPDDRPVMV
AIHKKILQSAGQPFEHSPLRMCARNGEYLTIDTSWSSFVNPWSRKVAFIVGRHKVRTSPL
NEDVFTPTVEVEARAMSPEIPRLSEQIHRVLVQPVHSGGSQGYCSSHGSHPQRPSPGSSS
GSNSPSTKELILKTIQRPQQMTFQQMCKDVHMVKTNGQQVFTKSRNRPALRKHASTGALV
VPDNLNKDLGPIGALGPTKTLASVQSRKDPSANYSYQQINCLDSIVRYLESCNVPNTVKR
KCGSSSCTTSSTSDDDKQRELPGTAKDLEGLQSNEGSKGGPQMSPLALHCKAESVVSVTS
QCSFSSTIVHVGDKKPPESDIVMMEETPATPTLTVTSPAPATNNAITMLVTPRPLALPSP
APPSPAQPDRDGRRSAGCSGRLGLTKEVLSAHTQQEEQVFLSRFRDLGELRVLDPGPPPL
RGLTTTPKGVHSSKDYPAGGHGRRRGRGGKRLKHQQEGSQRGMNGSFRREGQGPQGLTFP
MGQPLMMQGPLTSSSSWPASEASLPPAVAQYPPGVLPFFPLYPSVQQQVLGHTGVNPNVM
QMGYPSPQPGLPYPMHTMPLAPPMMVVLPNYMFPQLNGGVSPLNTTMPQYNTTIPNLCPG
IPGMAQLNQALPLFKQTIPLPQLNPGLAQFNPAMMQMNGMPRVSPALAQLNPSQVKPTLS
MIPQHCYDPRPALPFPNPIPIPSFALPEMDPTFVQRGNSRSSTPQSTCQAPLEGTDSPLF
QSRCSSPLNLLQLEELPGNRQEGMSTGAQQTLPPPGSVSQFGGQGSVKRSMKGGDREDDN
DNADDQDAMSTSSDLLDLLLQEDACSGTGSAASASGSSGSGSNGCSTSGSGTRSSNTSKY
FGSVDSSENDLSHKQAPGGAEEAQLMKYVLQDPIWLLTANTDDKVMMTYQMPTRDKETVL
REDGMILRAVQKQQPRFTEEQKRELIQVHPWMGTGRLPQAINSPTCTGCGSPPTSSAPRP
FNVELQDMDLTRVLQLQEETPVTMATDTHDTSIPPPQAPQTETKGGERQGEQERDDKDTR
VKELEVTSSSGTEKGDSGC
NT seq 4380 nt   +upstreamnt  +downstreamnt
atgagtgatgagaatgcaaacaccacttctggaaatgacactagtggagtaagtttagca
gaagatgcggtggcaggacaagaggcaggctcccagtccgctgagtctggactgagtcag
actggcagctccaatggaaatggacagaggactcggtctgggggcaagtcctcaaactct
gatgacaccgatgcccacttgagcgggaacgactcagccgagagagaagtggaaggtcac
atggggcatgaggcatcaacctgcagcagctcccataatgggaaggactctgtcatggag
acaaccgagagcaaaagctccaactcccacagcacttcccttcccaacagctctatggtc
tacagcctgctgagtggcagctcagagcaggaccacccatccaccagcggctgcagcagt
ggccagccgtcccggctgcagacccagagagagttgctcaaggccctgaaggagctgaag
atccgcatgcctgcagaccaccggacaaaaggccgctccagcactctggcctccctgcag
tacgctctcaactgtgtcaaacaagtcagagcgaatcaggagtattaccaccagtggagt
gtggaggagagccacggttgcagtctggacctctcagccttcaccacagaggaactggac
aacatcacctctgaatacacactccagaacacggacacattctctgttggagtgtccttc
ctctctgggaaggtggtgtacatctctccccaggcctctcccatgctgcgcactaaacct
gagcgactacagggagcgctcttctctgagctgctggccccccaggacgtcagcactttc
tacagcagcacggctccctgccgcctgcccccctgggcctcctgtactggctccatgacc
tcccctgtggactgcacccaggagaaatccatgttctgccgcatcagtggtgggagggac
agcgagggggaggtgcggtactaccccttccgtatgaccccctaccagctgacactgcgg
gactctgatatgtctcagccacagccctgctgcctgctcatcgctgagaaggtgcactca
ggatatgaagctccccgtatcccagctgacaagaggattttcaccactagccacaccccc
agctgtctctttcaggaagtcgatgaaagggctgtggcgttgctaggctacctgccccag
gacctggttgggacccctgtcctcatgtacctccaccctgatgacaggcctgtcatggtg
gccatacacaagaagattctgcagtcagcgggccagccctttgaacactcgccccttcgt
atgtgtgcccggaacggggagtatctcaccatagataccagctggtcctccttcgttaac
ccctggagccgcaaagtggccttcatcgttggtcgacacaaagtcagaacgagtcccctg
aacgaggatgtgttcacgcctactgtggaggtggaggcgcgggccatgtctccagagatc
cccaggctcagtgagcagatccaccgcgtgctggtgcagcctgtccacagtggcggctcc
cagggctactgcagctcccacggatcccacccacagaggcccagcccaggctcttcgtca
ggcagcaacagcccctccaccaaggagctcatcctgaagaccatccagagaccacagcag
atgacattccagcagatgtgtaaggacgtccacatggtgaagaccaatggtcagcaggtc
ttcaccaagtcccgcaaccgcccagcactccgcaaacacgccagcactggagccctggtg
gtgccagataatttaaacaaggacttgggacctattggagctctggggccaactaaaacc
ctggcctccgtgcagtcaagaaaagacccgtcagccaactactcctaccagcagatcaac
tgtctggacagcatcgtacgctacctggagagctgcaacgtccccaacacagtgaagagg
aaatgtggctcctcctcctgcaccacgtcatcaacgtcagacgatgacaagcagagggag
ttgcctggaacagctaaagacctcgaaggactccagagtaatgaagggtctaaagggggg
ccacagatgagccctctggcgctgcactgcaaggctgagagtgtggtctctgtcacgtcc
caatgcagcttcagcagcaccattgtccacgtaggtgacaagaagcccccagagtcagat
atagttatgatggaggagacaccagccacccccactctcaccgtcacctctccagcccca
gccactaacaacgccatcacaatgttagtgaccccccggccgttggccctgcccagcccg
gcaccacccagccctgcccagcccgatagggacggccgcaggtcagctggatgctcaggc
cgcctgggtctgaccaaggaggtgctgtctgcccacacccagcaggaggaacaggtgttc
ctgagccggttcagagacctgggagagctccgcgtgctggaccctggccctcctcctctg
agaggactcaccaccacacccaaaggagtgcacagctcgaaggactacccagcaggtggt
catggacggaggaggggccgcgggggaaagaggctgaagcaccagcaggagggctcccag
cgtgggatgaacggtagtttcaggagggaagggcaggggccccaaggcctcacgttcccc
atgggtcaacccctgatgatgcagggacccctgacctcgtcctcttcctggcccgcctct
gaggccagtctccctcctgccgtggcccagtaccctccaggagtcctgcccttcttccca
ctctaccccagcgtgcaacaacaagtcctgggccacaccggagtgaaccccaatgtcatg
cagatgggctaccccagcccccagccaggcttaccgtaccccatgcataccatgccgttg
gctcccccaatgatggttgttctgcccaactacatgttccctcaactcaacggaggtgta
tcaccgctcaataccaccatgcctcagtataacacaaccataccgaacctttgccccggt
atccctggtatggcacaacttaaccaagcactaccgctgttcaaacagactatcccacta
ccacaactcaatcctggattggctcagttcaaccccgctatgatgcagatgaatggcatg
cctcgtgttagtcccgccctagctcaactcaacccgtcacaggtcaaaccgactttgtcg
atgatcccccaacactgttacgatccccgcccagcattacctttcccaaatcccattccg
attcccagctttgccttacccgagatggatcccacctttgtccaacgtggcaactcccgc
tccagcacccctcagtccacgtgccaagcccccctggaggggacagactcgcccctcttc
cagtcacgatgctcctcccccctcaacctgctacagctggaggagttgccaggcaaccgc
caggagggcatgtcgacaggggcgcagcagacattgcccccacctggctcggtatcacag
ttcggaggtcaaggctctgttaagcgaagcatgaagggtggcgacagagaggacgataac
gataatgctgatgaccaggacgcaatgtccacctccagtgacctgctagacctactgttg
caggaggacgcctgctcaggcaccggctcggccgcctctgcctccgggtcctcaggctct
ggctctaatggatgcagcacctcagggagtggcacaagaagtagcaacaccagcaaatac
tttggcagcgttgactcgtcggagaacgacctttcccataagcaggcaccagggggggct
gaagaggcccagctcatgaaatatgtccttcaggaccctatctggctccttacggccaac
acagatgacaaggttatgatgacgtaccaaatgcccaccagggacaaagagactgttctc
agggaggatggtatgatactgagggcggtgcagaaacagcagccgcgcttcactgaggag
cagaagagagagctgatccaggtccatccctggatgggcaccggacgcctgccacaggcc
atcaacagccctacttgtacagggtgcggttctcctcccacttcctccgccccccggccc
tttaatgtggagctgcaggacatggatctgacacgggtcctccagctacaggaagagacc
cctgttaccatggcaacagacacacatgacacctccatcccaccaccacaagcaccccag
acagagactaaggggggtgagcggcaaggggagcaggaacgagatgataaggataccaga
gtgaaagagttggaggtgacgtcatcatccggaacagagaaaggggactctggctgttaa

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