Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418523
Help
Entry
139418523 CDS
T10872
Name
(RefSeq) nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03008
Ribosome biogenesis in eukaryotes
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139418523
03015 mRNA surveillance pathway
139418523
03008 Ribosome biogenesis in eukaryotes
139418523
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139418523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139418523
03009 Ribosome biogenesis [BR:
ocla03009
]
139418523
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139418523
mRNA cycle factors
Stress granule specific factors
139418523
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
139418523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
LRR_6
Motif
Other DBs
NCBI-GeneID:
139418523
NCBI-ProteinID:
XP_071024164
LinkDB
All DBs
Position
10:43412688..43428572
Genome browser
AA seq
634 aa
AA seq
DB search
MSTADDSRYHNDHDDRVGGQTFRNRKGRGPFRAHMYSDQGPGAPGTRTRYRGGQKGGGGQ
GPRARFDDEDGDVAMTDSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGGHRGRGN
NRGDGGGDGRNTWFKIFVPYGKKYDKDWLITALQSICSIPFTPVNYQVEGNRAQFYIDDS
ITANALLKISRKITDKEGYKVTVLMNPCPPPPGLQSELKPADLEHLKQCMAKRFDHSQQA
LDLNNIRIDPDLVSQNIDVTLNRKNSMHAVIKIIEENIPELVCLNISNNKLFRLDDLSEL
VNKAPNLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDHASYISTVRERFP
RLLKLDGQDLPPPIVFDVEVTPAALPPCKASYFCSEEIKTPILAFLQQYYSVYDSGDRQP
LLDAYHDGATFSLSMFITMQNPSRCSLGDYHKDTRNLKKLKDPSTRFRLLKHTRLNVVAF
LNELPKTHHDTASLNVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFSRVFITVPAGGT
SLCIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTISAPQQEMLSAFSLKSGMNLEWS
QKCLQDNEWDFNRAGQVFTDLKAHGKIPDVAFIK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagccgacgattcacgttaccacaacgatcacgatgacagagttggaggacaa
acgtttcgcaaccgcaaaggcaggggtccttttagggcccatatgtatagtgaccagggg
ccaggagcaccagggacaagaacaagatatcgtggtggccaaaaaggcggtggcggccag
ggacccagagcgagatttgacgatgaggatggagatgtggcaatgacagacagcaactcc
caagatgggtcctcccaacacagatttaacccttacggaaggccgaatcgccgtggtgat
gaccgctttgatcgtggccgcagaggtggcggtggaggaggtcacaggggtcgtggtaat
aacagaggggatggaggtggagatggccgcaatacctggttcaagatatttgtcccctat
ggaaagaaatatgacaaagactggctcataacagctctgcagagtatctgctctataccc
ttcaccccagtaaattaccaagtagagggcaaccgagcacagttctatattgacgattcc
atcactgcgaatgccttgttaaagatatctcggaagatcacagacaaagaaggctacaag
gtgactgtactgatgaatccctgtcctccaccccccggtcttcagtctgaactaaagcca
gcagatctggagcacctaaagcaatgcatggctaaacgctttgatcactctcaacaagcc
ctggacttgaacaacatccggatagacccagacctggtttcccagaacattgatgtgaca
ttgaacagaaagaactctatgcacgctgttattaagataattgaggagaacattccagag
cttgtttgcctgaacatcagcaacaacaagctgtttaggctggatgacctgtcagagctg
gtcaacaaggctccaaacttgaagacactcaatctttctcataatgagttaaagacagag
cgtgagctggataggatcaagggtcttaagctggtggagctatggctggagaggaatccc
ctttgcgactatttcaaggaccatgcttcttacataagcacggtgagagagaggttcccc
aggcttctcaaactggatggtcaggatctcccccctcctatagtctttgatgtggaggtg
actcctgctgcccttccaccctgcaaggccagctacttctgctcagaagagatcaagact
cccatcctcgccttcctacaacaatactacagtgtgtatgactccggggacagacaacct
ttgttagatgcctaccatgatggagcgaccttctccttgagcatgttcattaccatgcag
aacccatccaggtgcagtctcggagattaccataaagacactcggaacctgaaaaagctc
aaagatccctccacacgattccgcttactgaagcacacccgtctgaatgtggtggctttc
ctgaacgaactgcccaaaacacaccatgacactgcatcactaaatgtggacgtcaacacc
ttcaccaacacgttactgtcgttcacagtcactggagtgttcaaagaagttgaaggtaaa
tcccgagactctgtcagagctttctctcgggtgttcatcacagtgccggctggagggaca
agtctttgcatagtaaacgacgagctttttgttcgtaatgctacaactgaggagatccgg
cgggcctttgttgcacccgcccccacaccatccagcagccctgtccccaccatctcagct
ccccagcaagagatgctttctgccttctccctaaagtccggcatgaacctggaatggtcc
cagaaatgcctgcaggacaatgagtgggatttcaacagagcagggcaggtcttcacagac
cttaaggctcatggaaagatcccagatgtcgctttcataaagtga
DBGET
integrated database retrieval system
