Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418547
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Entry
139418547 CDS
T10872
Name
(RefSeq) zinc finger protein ubi-d4-like isoform X1
KO
K13196
zinc finger protein ubi-d4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139418547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139418547
03036 Chromosome and associated proteins [BR:
ocla03036
]
139418547
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
139418547
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139418547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPF1-3_N
PHD
PHDvar_NSD
PHD_4
zf_RING_Vps8
PHD_2
Motif
Other DBs
NCBI-GeneID:
139418547
NCBI-ProteinID:
XP_071024200
LinkDB
All DBs
Position
10:complement(43926711..43941330)
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AA seq
415 aa
AA seq
DB search
MAAVVENVVKLLGEQYYRDAMEQCHNYNARLCAERSVRMPFLDSQTGVAQSNCYIWMEKR
HRGPGVAPGQLYTYPSRRWRKKRRSHPPEDPRLVFPPLKSELDLGLKKDSLSSDGSSLEA
LLKGEPLDKRVPPELRGPEEESSLTDYTGGAVTPAARIRKRVLEPDDFLDDLEDEDYEED
TPKRRGKGKGKGRGVSNAKKKLDAAAAALEDKDKPYSCDNTFKQKHISKPSERVCGKRYK
NRPGLSYHYTHSHLAEEEGEDKEEPEVHTPIPPQPEEPKTPKKGPDGLAIPNNYCDFCLG
DSALNQKTGQSEALQSCSDCGRSGHPSCLQFTPVMMAAVKTYRWQCIECKCCNICGTSEN
DDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLDLLKDKASIYQTRSVPPS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgttgttgagaatgttgtcaaactgctcggagagcagtactacagagatgcc
atggagcagtgccataactacaacgcccggctatgtgccgagaggagtgtccgaatgccc
ttcctggactctcagactggagtggcgcagagcaactgttacatttggatggagaagaga
cacaggggaccaggcgtggccccaggacagttgtacacctacccatcccgcaggtggagg
aagaaacgacgatcccaccccccagaggatccccgactcgttttccctcctctaaagtca
gagctggacttggggttaaagaaggattccctgtcctctgatggcagcagtctggaggcc
ctgctgaagggagaacccctggacaaacgggttcctccggagctccgagggcctgaggag
gagtccagtctgacagactacactggtggggcggtcacccctgcagcacgcatcagaaag
agagtcctggagccagatgacttcctggatgacttggaggatgaggactatgaggaggac
accccaaaaagaagagggaaaggaaagggaaagggtcgtggagtaagcaatgccaagaag
aagctggacgctgcggcggctgcgctggaggacaaggacaagccctactcctgtgacaac
actttcaaacaaaagcatatttcaaaaccttctgaaagagtctgtgggaagcgttacaag
aatcgtccgggcctgagctaccactacacccactcccacctggctgaggaggagggagag
gacaaggaggagcctgaggtccacacccccattccgccccagcctgaggagcctaagaca
cccaagaaaggtccagatggtttggcgatacccaataactactgtgacttctgcctggga
gactctgccctcaaccagaagacgggccagtcagaggcgctgcagtcctgctcagactgt
ggacgttcaggccacccgtcctgcctgcagttcacccccgtgatgatggctgcagtgaag
acataccgctggcagtgcatcgagtgcaagtgctgcaacatctgtggcacctcagagaac
gacgaccagcttctcttctgtgatgactgtgatagaggctatcatatgtactgtctcagc
ccccctatggctgaacctccagaagggagctggagctgccatctgtgtctggacctattg
aaagacaaggcgtcaatataccagacccgtagtgtccctccgtcgtga
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