Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418577
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Entry
139418577 CDS
T10872
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1
KO
K15047
heterogeneous nuclear ribonucleoprotein U-like protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139418577
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139418577
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
hnRNP proteins
139418577
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
139418577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
Zeta_toxin
AAA_18
KTI12
Motif
Other DBs
NCBI-GeneID:
139418577
NCBI-ProteinID:
XP_071024246
LinkDB
All DBs
Position
10:45107951..45116585
Genome browser
AA seq
878 aa
AA seq
DB search
MSGINVKKLKVNELKEELQLRGLDTRGLKADLVIRLQSALEAEAAGEGDGPPIADVGEEG
DQQTDIGGDAGDGDDGTNIGGSKFKDDGEEEKYIKDKEVQFVPQADEANGDNEQSEEDSR
DGAQMYGQVPAMGSGMVDFTEDVMEPQIPQAYESDKRPEPQVLEPEMEEPVQPEPVQPKP
VQKEPLKSESIEPVEMPEIKPEEFVMKAELKKEQEQLKEEKESQQPRAHHPEPANEWEAE
QATQAKTEDNRHNRKRPYDEGRGYGYYEHREEKRGRSPQPPAEEEEEDFDDTLVAIDTYN
CDLHFKVSRDRYSGYPLTIEGFAYLWSGARASYGVNKGRVCFEMKVNEEISVKHLPSSEP
DPHVVRIGWSLDTCNTQLGEEPFSYGYGGTGKKSSKCKFEDYGEKFGENDVLGCYIDFDS
GEGVEMAFSKNGKWLDVAFRVSREELAERPLFPHVLVKNCAIEFNFGQKEEPFFPLPEGY
TFIQNVPLENRMRGTVGPASKADCELLMMVGLPASGKTTWALKHAEEHPAKKYNILGTNA
IMEKMKVMGLRRQKNYSGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRK
MRPFEGFQRKAIVICPTDEDLKERTLKRTDEEGKDVPDHAVLEMKANFVLPEAGEFLDDV
TFIELKREEADTLVKQYNEEGRKAGPPPDKRFDNRQGGFRGRGAPYQRYDNRGGPQGARG
GYQSQGGNFRGGYNHGGYQQNRWGSNRDGAAGGQHGYNRNQQSGVSYNQHRQGQYNKGAT
GSYSQGQPQTYNQGYNQGNYNQGYNYGSYSQYPGYSQTPAASAAPVATGQTYNQQQQTYN
QQYQQYAQQWQQYYQNQSQWNQYYSQYGNYSQGSQGTQ
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaatcaatgtgaagaagctcaaagtcaacgagctgaaggaggagcttcagctg
cgaggcctggatactcgtgggctgaaggcggatctcgtcataaggttgcagtcagcactt
gaggccgaggctgcaggtgaaggggatgggccaccgattgccgatgttggggaggagggg
gatcagcaaaccgatattggcggagacgctggagatggtgatgacggtacaaatattggg
ggttcaaagtttaaagatgatggggaagaagaaaaatatattaaggacaaggaagtacag
tttgtcccgcaggctgatgaggcgaatggtgataacgaacagagtgaagaagacagccgg
gatggggcgcagatgtatggtcaagtccctgcaatgggatctgggatggtcgatttcaca
gaagatgtgatggagccacagattccgcaggcgtatgagtcagacaaaagaccagagcca
caggtgctagaaccggagatggaggaacctgtgcaaccagaacctgtgcaaccaaagcct
gtacaaaaagagccactgaagtcggaatcaattgagcctgtagagatgcctgaaattaag
ccagaggagtttgtgatgaaagcagagttgaaaaaggagcaggagcagttgaaggaagag
aaggagtcccagcagccaagagctcatcatccagagccagccaatgaatgggaggctgag
caggcgacccaggccaaaacggaggataaccgacacaaccgtaagaggccatacgatgaa
ggccgtggctatggatactatgaacatcgggaggaaaaaaggggacgttctccccagcct
ccagcagaggaagaggaagaagattttgatgacactctggtggccattgatacttataat
tgcgatctgcacttcaaggtatcacgtgaccggtatagtggatacccgctgaccattgaa
ggttttgcatacctgtggtcaggtgcacgagcttcctatggcgtcaacaaagggcgagtc
tgctttgaaatgaaggtaaacgaggagatctctgtgaagcaccttcccagcagtgagcct
gatcctcatgtagtgcgcattggctggtctctggacacctgcaacacacagctcggtgaa
gaaccgttctcttatggctatggaggaactggcaagaaatcttcgaagtgtaaatttgag
gattacggggaaaagtttggtgaaaacgatgtccttgggtgctacattgacttcgatagc
ggtgagggagtggagatggccttctcaaagaacggcaagtggctagatgtggccttccgt
gtgtcacgggaggagttggccgagcggccactctttccccacgttcttgtgaagaactgt
gccattgagttcaactttggccagaaagaggagcccttcttccccctgccagagggatac
accttcattcagaacgtccctctggagaacaggatgcgggggactgttgggcctgcctcc
aaggctgactgtgagctattgatgatggttggtctgcctgcgtctgggaaaaccacttgg
gccttgaagcacgcggaggagcaccctgcaaagaaatacaacatcctgggcaccaacgcc
ataatggagaagatgaaggtgatggggctgcggcgtcagaagaactattctggtcggtgg
gatgtcctgatccagcaggccacacagtgtctgaacaggctgatccagatcgctgcccgc
aagaagcgtaactacatcctggatcagacaaatgtatatggatcagcccagagacgaaaa
atgcgtccttttgaaggttttcaacgcaaggctattgtaatatgtcccacggacgaggat
ttaaaagagcgaacgttaaagcgaactgatgaggaagggaaggatgtgcccgatcatgct
gtattagaaatgaaagccaactttgtgctcccagaagctggtgagtttcttgacgacgtg
accttcatcgagctgaaacgagaagaggctgacacgctggtaaagcaatacaacgaggag
ggccgcaaggccggcccacccccagacaaacgcttcgacaaccgccaaggaggattccgt
ggtcgtggtgcaccctaccagcgctatgacaaccgtggtggtccccaaggggcaagggga
ggctatcagagtcaaggtggcaacttcagaggagggtataaccatggaggctaccagcag
aaccgctgggggagcaaccgtgatggtgctgcaggaggacaacatggctacaaccgcaac
cagcaatctggagtgagctacaatcagcaccgccaaggacaatataacaagggagccact
gggagttacagccaaggacagccacagacatacaaccagggatacaatcagggcaactac
aaccagggttacaactacggcagctacagccagtacccaggttacagccaaactcctgcc
gcctccgctgctcctgttgccactggacagacctacaaccagcagcaacagacctacaac
cagcagtatcaacagtatgcacagcagtggcagcagtattaccagaaccagagccaatgg
aatcagtactacagccaatatggaaactacagccagggttctcagggcacacagtag
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