KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418577
Entry
139418577         CDS       T10872                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1
  KO
K15047  heterogeneous nuclear ribonucleoprotein U-like protein 1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocla03041]
    139418577
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139418577
Spliceosome [BR:ocla03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   hnRNP proteins
    139418577
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     139418577
SSDB
Motif
Pfam: AAA_33 SPRY SAP AAA_17 Zeta_toxin AAA_18 KTI12
Other DBs
NCBI-GeneID: 139418577
NCBI-ProteinID: XP_071024246
LinkDB
Position
10:45107951..45116585
AA seq 878 aa
MSGINVKKLKVNELKEELQLRGLDTRGLKADLVIRLQSALEAEAAGEGDGPPIADVGEEG
DQQTDIGGDAGDGDDGTNIGGSKFKDDGEEEKYIKDKEVQFVPQADEANGDNEQSEEDSR
DGAQMYGQVPAMGSGMVDFTEDVMEPQIPQAYESDKRPEPQVLEPEMEEPVQPEPVQPKP
VQKEPLKSESIEPVEMPEIKPEEFVMKAELKKEQEQLKEEKESQQPRAHHPEPANEWEAE
QATQAKTEDNRHNRKRPYDEGRGYGYYEHREEKRGRSPQPPAEEEEEDFDDTLVAIDTYN
CDLHFKVSRDRYSGYPLTIEGFAYLWSGARASYGVNKGRVCFEMKVNEEISVKHLPSSEP
DPHVVRIGWSLDTCNTQLGEEPFSYGYGGTGKKSSKCKFEDYGEKFGENDVLGCYIDFDS
GEGVEMAFSKNGKWLDVAFRVSREELAERPLFPHVLVKNCAIEFNFGQKEEPFFPLPEGY
TFIQNVPLENRMRGTVGPASKADCELLMMVGLPASGKTTWALKHAEEHPAKKYNILGTNA
IMEKMKVMGLRRQKNYSGRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRK
MRPFEGFQRKAIVICPTDEDLKERTLKRTDEEGKDVPDHAVLEMKANFVLPEAGEFLDDV
TFIELKREEADTLVKQYNEEGRKAGPPPDKRFDNRQGGFRGRGAPYQRYDNRGGPQGARG
GYQSQGGNFRGGYNHGGYQQNRWGSNRDGAAGGQHGYNRNQQSGVSYNQHRQGQYNKGAT
GSYSQGQPQTYNQGYNQGNYNQGYNYGSYSQYPGYSQTPAASAAPVATGQTYNQQQQTYN
QQYQQYAQQWQQYYQNQSQWNQYYSQYGNYSQGSQGTQ
NT seq 2637 nt   +upstreamnt  +downstreamnt
atgagtggaatcaatgtgaagaagctcaaagtcaacgagctgaaggaggagcttcagctg
cgaggcctggatactcgtgggctgaaggcggatctcgtcataaggttgcagtcagcactt
gaggccgaggctgcaggtgaaggggatgggccaccgattgccgatgttggggaggagggg
gatcagcaaaccgatattggcggagacgctggagatggtgatgacggtacaaatattggg
ggttcaaagtttaaagatgatggggaagaagaaaaatatattaaggacaaggaagtacag
tttgtcccgcaggctgatgaggcgaatggtgataacgaacagagtgaagaagacagccgg
gatggggcgcagatgtatggtcaagtccctgcaatgggatctgggatggtcgatttcaca
gaagatgtgatggagccacagattccgcaggcgtatgagtcagacaaaagaccagagcca
caggtgctagaaccggagatggaggaacctgtgcaaccagaacctgtgcaaccaaagcct
gtacaaaaagagccactgaagtcggaatcaattgagcctgtagagatgcctgaaattaag
ccagaggagtttgtgatgaaagcagagttgaaaaaggagcaggagcagttgaaggaagag
aaggagtcccagcagccaagagctcatcatccagagccagccaatgaatgggaggctgag
caggcgacccaggccaaaacggaggataaccgacacaaccgtaagaggccatacgatgaa
ggccgtggctatggatactatgaacatcgggaggaaaaaaggggacgttctccccagcct
ccagcagaggaagaggaagaagattttgatgacactctggtggccattgatacttataat
tgcgatctgcacttcaaggtatcacgtgaccggtatagtggatacccgctgaccattgaa
ggttttgcatacctgtggtcaggtgcacgagcttcctatggcgtcaacaaagggcgagtc
tgctttgaaatgaaggtaaacgaggagatctctgtgaagcaccttcccagcagtgagcct
gatcctcatgtagtgcgcattggctggtctctggacacctgcaacacacagctcggtgaa
gaaccgttctcttatggctatggaggaactggcaagaaatcttcgaagtgtaaatttgag
gattacggggaaaagtttggtgaaaacgatgtccttgggtgctacattgacttcgatagc
ggtgagggagtggagatggccttctcaaagaacggcaagtggctagatgtggccttccgt
gtgtcacgggaggagttggccgagcggccactctttccccacgttcttgtgaagaactgt
gccattgagttcaactttggccagaaagaggagcccttcttccccctgccagagggatac
accttcattcagaacgtccctctggagaacaggatgcgggggactgttgggcctgcctcc
aaggctgactgtgagctattgatgatggttggtctgcctgcgtctgggaaaaccacttgg
gccttgaagcacgcggaggagcaccctgcaaagaaatacaacatcctgggcaccaacgcc
ataatggagaagatgaaggtgatggggctgcggcgtcagaagaactattctggtcggtgg
gatgtcctgatccagcaggccacacagtgtctgaacaggctgatccagatcgctgcccgc
aagaagcgtaactacatcctggatcagacaaatgtatatggatcagcccagagacgaaaa
atgcgtccttttgaaggttttcaacgcaaggctattgtaatatgtcccacggacgaggat
ttaaaagagcgaacgttaaagcgaactgatgaggaagggaaggatgtgcccgatcatgct
gtattagaaatgaaagccaactttgtgctcccagaagctggtgagtttcttgacgacgtg
accttcatcgagctgaaacgagaagaggctgacacgctggtaaagcaatacaacgaggag
ggccgcaaggccggcccacccccagacaaacgcttcgacaaccgccaaggaggattccgt
ggtcgtggtgcaccctaccagcgctatgacaaccgtggtggtccccaaggggcaagggga
ggctatcagagtcaaggtggcaacttcagaggagggtataaccatggaggctaccagcag
aaccgctgggggagcaaccgtgatggtgctgcaggaggacaacatggctacaaccgcaac
cagcaatctggagtgagctacaatcagcaccgccaaggacaatataacaagggagccact
gggagttacagccaaggacagccacagacatacaaccagggatacaatcagggcaactac
aaccagggttacaactacggcagctacagccagtacccaggttacagccaaactcctgcc
gcctccgctgctcctgttgccactggacagacctacaaccagcagcaacagacctacaac
cagcagtatcaacagtatgcacagcagtggcagcagtattaccagaaccagagccaatgg
aatcagtactacagccaatatggaaactacagccagggttctcagggcacacagtag

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