Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418804
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Entry
139418804 CDS
T10872
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139418804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139418804
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139418804
mRNA degradation factors
5'-3' decay
Decapping complex
139418804
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
HTH_AraC
Motif
Other DBs
NCBI-GeneID:
139418804
NCBI-ProteinID:
XP_071024620
LinkDB
All DBs
Position
10:complement(56507773..56533378)
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AA seq
806 aa
AA seq
DB search
MFRFQSLDEDCTLEKEEGLVEEEDEIDQFNDDTFGDGAIDDDWQEEHKRLAELEERKNDG
LGGLGLGGLGMGGMGGGDSSTVQLPPPASRVPHPSSLPPPHHSLSSMPPPGLEERGGGDL
AESLAMLILGADPAIASVGGPAGPGDRSTGLPPPPSIPQQHHHPSQLPSHHQLTPSGLPP
GPLHPSLLSYQQHQHLLRRGGAPMQQMNSHNIWENNMGFGPVSVTPGLITQMEDSPLMSI
IKEVGLPNRPPPVMSEDGRDFSERAPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHAMNHQ
QQIHHPTTVHVRAPVHHQHRYPPSFPERISPNTLLNMANSPLCRPPFPAGVGPVLSQIQR
AQMLNSQVAGFPRGCQGPPLLPGGGGFRPFFGQPPPHRMGPHHNHVPCPIIRHNTTHLHP
QHRRMLTQRMQSRGGERGGRVGDWRSRDPYSNLMTQREKEWVAKIQMMQLQSTDPYLDDY
YYQNYFEKMEKRQERDRDGVRKEHTTKLITPQVAKLEHTYRPVQFAGSLGKLTVSSVNNP
RKMIDTVVTSRTDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFMQTPEEQREA
LLEQHKTHTLQLYASLKEKEWDDRVSDEQCLLIMSVRKGKRLISRLIPFLPPLQAATVVM
GIARNLHALAKKDKQDQALCWLVEPVAVVISSLSSAALTDLLQELQGSEGQLSKVLQNKF
GVTLLYLILSEGERMQSSDLNCQLMDDNRWTELVFSVTRELLNVPPSSLSPPLFTPPNLL
SLFSRYVDRQRLELLQEKLQISALSR
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcccttgatgaagattgtaccctggagaaggaggaggggctggta
gaagaagaagatgagattgaccagtttaatgacgacaccttcggagatggagccatcgat
gatgactggcaggaggagcacaagcggctcgcagagctcgaagaacgaaagaacgacgga
cttggaggtttaggtctagggggactagggatgggtggaatgggaggtggagactcctcc
accgttcaactccctcctcctgccagtcgcgtcccccacccgtcatccctccccccacca
catcactccctctcttcgatgcccccgccgggcctggaggagagggggggaggcgaccta
gccgagtccctagccatgttgattctcggggcggacccggccatcgccagcgtgggtggt
ccagccgggcctggtgacaggtccactggtctccctcctcccccttccattccccagcag
caccaccacccctcccagctcccttctcaccaccagctgaccccgtcggggctgcccccg
ggcccactgcatccctccctactgagctaccagcagcatcagcacctcctacgccgaggg
ggtgcccccatgcaacagatgaactcacacaatatctgggagaacaacatgggatttggg
cctgtgagcgtcacccctggactaatcactcaaatggaggacagtccactaatgtccatt
atcaaagaggtggggctgcccaatcggcctccgccagttatgagcgaagatgggcgggac
ttttcggaaagggcccccccgcctcgctcgtcctcacccgtgattggaagcccaccagtg
agggctgtgcctatcgggactccgcccaagcagccgatgagtcatgctatgaatcatcag
cagcagatccaccaccccaccaccgttcatgtgcgagccccggtccaccaccaacaccgc
tacccaccttccttccctgagcgcatctcccccaataccctcttaaacatggctaactct
cctctttgtcgtcctccattcccggccggcgtgggtcccgttctgtcccagatccaacgt
gcccagatgctcaactctcaggttgctggcttccccaggggctgtcagggccccccgttg
ctgcctggcggtggaggcttcaggcccttcttcggccagccccctccccacaggatgggt
ccccaccacaaccacgtaccctgtcccatcatccggcacaacaccacgcacctgcacccc
cagcaccgacgcatgctcacccagaggatgcagagtagaggaggtgagcgtggcgggcgt
gtgggggactggcggagcagagacccctacagtaacttgatgacccagagggagaaggag
tgggtggccaagatccagatgatgcagctgcagagcactgatccctacctggatgactac
tactaccagaattactttgagaagatggagaagaggcaggagagagaccgagacggcgtg
aggaaggagcacaccaccaaactcatcaccccccaggtggccaagctggaacacacctac
agaccagtgcagtttgcaggctcactgggtaagctgactgtgtccagcgtcaacaacccc
aggaagatgatcgacacagtggtgaccagtcgcactgatgacgaggagaagagagagaaa
caggtgtggaataagaggcggcagatcctctacactgtggagaagatgtacagtctgctg
ctggaggtgcaggactttgagaagcgcttcatgcagacgccagaggagcagagagaggcc
ctgctggagcagcacaaaacccacacgctgcagctctacgcctccctcaaggagaaggag
tgggacgacagagtgagtgacgagcagtgtttgttgatcatgtcggtgcgtaagggaaag
cgcctcatctccaggctcatcccattcctgcctccgctgcaggctgccaccgttgtcatg
gggattgcccggaacctgcacgccctggccaagaaagacaaacaggaccaggcgctgtgc
tggttggtggagcccgttgctgtggtgatctcttccctatctagcgctgccctcacagac
ttgctgcaggagctgcaaggcagcgagggtcaactgtccaaagtgttgcaaaataagttt
ggtgtgacgctgctttacctgatcctgagtgaaggagagcgaatgcaaagctccgacctt
aactgtcaactcatggatgacaatcgatggacggagttggtgttctctgtgaccagggag
ctgctcaatgtgcccccctcgtccctgtcccctcctctcttcacccctcccaacctgctc
tctctcttctcgcgctacgtagaccgacagaggctggagctgctgcaggagaagttacag
atctccgcattgtccaggtag
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