Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418838
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Entry
139418838 CDS
T10872
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3 isoform X1
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139418838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139418838
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
139418838
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
HECT type E3
139418838
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
139418838
NCBI-ProteinID:
XP_071024673
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Position
10:58394034..58403893
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AA seq
1012 aa
AA seq
DB search
MISWGEDCRNGFGLVKPNGLDTTKADINLIHLKSKIQALSAGNSVVAFIRNNGRLVSVAR
IQEDQDGRRFTGKLKTVKCKETIRALSCGDSHAVLLSEEGRVLCLDKANILSPLGNLCNR
QITQVACGDQHSILLTRDGQVFTWGQNTSGQLGLGWGEPRNISMSPKPLKSLSGIPLVQI
TAGGEHSFALSLSGAVFGWGKNTAGQLGLGDTTNRCDPAPVDCLNLKKTVLISCGGEHTA
VLTKGGVVFTFGSGRYGPLGHNSLRDELRPRVVGHLCGLKVTQIACGRHHTLAFVGPSNK
IYSFGRGEQGQLGNGVKIDQSVPLPVQLPDQIDDQKIEHIFAGGNHSFALCTLGQESEER
PNNLRSSVGKVTQQAIDEEIIDKWISECDSKSWKKGQKEIRKMFSSASCLNGSFLDKSCD
KHYQTSPKQSGLDYSLVQGAFRKLAKKGKVLTEVEAVVQHTLLPSLYEESIGVESLRVYL
VLPELLRVLHKQHRRTDLTEAVAAAILRLHPNKLQVLGDCWSSLKPSVMTKHIGVWKKAL
SGILRSEHILPTRDTGIKHLLQVLGHLHRANQTSVETQTVPDSTFCMEEVHFNPIFLEED
IKLWRLWSKQDVDQTPAIFCRYPFLMNLQSKINVFNINAALTKNPPNNRQRTGMWLFDMF
LVAAPAPVFELRLNRASLIEDTFHQLSVAYHSTFKRSLVVYFDEDAKLTDVYKRDFFLHL
FDKLLVPESGMFMYNDTNTLAWFPAMPRVEEKRYFLFGVLCGMALYNNNMVHLPFPMAFF
KKLVNIKPSLEDLREFSPIEAGSLQYILDYPDDDVENMDMTFSVMWGDVAVELDPKETGK
LVTSANKKEFVDTYVNYIFNQSVEVVFEEFRKGFFKVCDKDVVEFFQPEELRGVMVGKEN
FDWETLKQNTVYEGEYHAGHPNIVTFWEVFEELTEDQKKAFLLFLTGCDRVPILGMNQIR
MRVQTLLNSSQQHFPEALTCHSLLQLPIYPSKETLHSRLIEAVGHNRGFWNE
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgatttcatggggagaggattgtcgtaatggctttggtttagtgaagccgaatggttta
gatacgaccaaagcggatattaatttgatacaccttaaatctaaaattcaggctctgtcc
gcaggtaacagtgtggtcgcgtttatcagaaataatgggagactagtgtctgtcgcacgg
attcaagaggaccaagatgggagaagattcacagggaaactgaagactgtgaaatgtaag
gagacgattcgggctctgagttgtggagattctcatgctgttttactgtctgaagagggt
cgggttctctgcttggacaaagccaatattctcagcccattgggtaacctatgtaaccga
cagataactcaggttgcatgtggagaccagcattcaattttactaactcgggatggtcag
gttttcacatggggtcagaacaccagcggtcagctgggtttggggtggggcgagccacgc
aacatttccatgtcccccaagcccctgaagtctctatcagggatccccctggttcagatc
actgcagggggagaacacagcttcgctctgtccctttctggagctgtgttcggctggggc
aagaacaccgccgggcaactgggactaggggacacaacaaacagatgtgatccagctcct
gttgattgcctgaatctgaagaagactgttttgatttcatgtggaggagaacatactgcc
gttctgacaaagggaggtgtggtgttcacatttggctcaggccgctatggaccgcttgga
cacaactctctccgagatgaactacgacctcgagtggtggggcatctttgtggattaaag
gtgacccagatagcctgtggaagacaccacacattagcatttgtggggccctccaataag
atctactcatttgggcgtggagagcaagggcagctgggaaatggagtaaagattgatcag
tctgtgccccttccagtacaactgccagaccagattgatgaccagaaaattgaacacatt
tttgctggaggaaaccattcctttgcattgtgcactcttggtcaggagtctgaagaaagg
cctaacaatctcaggtcaagtgtgggcaaagtgacacaacaagctatagatgaagaaatc
attgacaaatggatctcggaatgtgattcaaagtcttggaaaaaaggacagaaggaaatc
agaaaaatgttttcttctgcatcgtgtttaaatgggagctttcttgataaaagttgtgac
aaacattaccaaacctcaccaaaacagtctggcctggattattcactcgtccaaggcgca
ttccggaagctggcgaaaaagggcaaagttttgactgaggttgaagctgttgtccagcac
acactacttccctccctgtatgaggagtccattggagtggagagcttgagggtctacctg
gttctccctgagctcctgagggtccttcacaaacagcacagaaggacagatctcaccgaa
gccgttgctgctgctatcctcagactgcaccccaacaagctgcaggtcctcggtgactgc
tggtcctcattgaagccgtctgtcatgaccaagcacattggggtgtggaagaaggccctg
tcggggattctgaggagtgaacatattctacccactcgtgatactgggatcaagcacctg
ctccaggtcctcggccatctccacagagcaaaccagacatctgtagagacccagactgtt
ccagacagtaccttttgtatggaggaggttcacttcaatcccatatttctagaggaggat
ataaagctttggcgtttatggtcaaagcaggatgtggatcagacacctgccatcttttgt
cgttacccattcttgatgaatctgcagagcaagataaacgtttttaacatcaacgccgca
ctcacaaagaatccccctaacaatcgccaaaggactggtatgtggctttttgacatgttc
ctcgtggcggcgcctgctccggtctttgagctgagactgaatagagcatcactcatagaa
gacactttccatcaactgagtgtagcatatcacagtaccttcaagaggtcccttgtggtg
tatttcgacgaggatgcgaagctgacagatgtctacaaaagggacttcttcctccatttg
tttgataagctgttggtacccgagtctgggatgttcatgtacaacgacaccaatacgctg
gcctggttccctgcaatgcctagagtggaggagaagcgttatttcctgtttggggttctg
tgtgggatggccctgtacaacaacaacatggtgcacctccccttccccatggccttcttc
aagaagctggtgaacatcaagccctctttagaggacctgagagagtttagccccattgaa
gcagggagtttgcagtacatcttggattaccctgatgatgatgttgaaaacatggacatg
actttctcagtgatgtggggtgatgtagcggtggaacttgatcccaaagaaactggaaaa
ctcgtcacaagtgccaacaagaaggagtttgttgacacctatgtgaactacatcttcaac
cagtcagtagaggtggtgttcgaagagttcaggaaaggcttcttcaaggtgtgtgacaag
gacgtggtggagttcttccagccagaggaactgaggggagtgatggtggggaaggagaat
ttcgactgggaaacgctgaaacagaacactgtgtatgaaggagagtaccatgctgggcat
cccaacatcgtcacattctgggaggtgtttgaggaactgacagaggatcaaaagaaagcg
ttcctgttgttcctgactggctgtgatcgtgtgcccatcctgggtatgaaccagatcagg
atgagggtccaaacccttctcaactcctcccaacagcatttcccagaggcgctgacctgt
cactctctgttgcagctgcccatctacccctccaaagagacactacacagcaggcttata
gaagctgttggccacaacagaggcttctggaatgaataa
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