Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419155
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Entry
139419155 CDS
T10872
Name
(RefSeq) replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030
DNA replication
ocla03410
Base excision repair
ocla03420
Nucleotide excision repair
ocla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139419155
03410 Base excision repair
139419155
03420 Nucleotide excision repair
139419155
03430 Mismatch repair
139419155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139419155
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139419155
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139419155
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139419155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_7
RuvB_N
Rad17
AAA_30
AAA_33
AAA_16
AAA_17
AAA_14
nSTAND3
BRCT_2
AAA_18
NPHP3_N
NTPase_1
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
139419155
NCBI-ProteinID:
XP_071025232
LinkDB
All DBs
Position
10:77009999..77096425
Genome browser
AA seq
1177 aa
AA seq
DB search
MDIRRFFVSSKPAAQKPSQDGTLNTEKESTKKKKQSVSTDEEVKKKKPATKITSPKVEKK
KKKDNERKRRAVIESDSEEEVVKQKAQKPNLPLPPAPLPPAKKDPVQYVSETDSDSDNFL
SLKKSQAKPQGNGVPKPGKARPGTKESHRSPPKPTLVPATGKGGMKKSPPAPVTPKSAPP
QTKRTPTSVLDYFGSGSVQRSDRRLVASTKRKTLSQDPDESLTDEVIAQQLQMDEDMELE
RQVHEDEEFAKTLAMLDQQPHAKKARKYSGEDLGSATSANKSSANSSHSNTASQSQPNGR
DHNQDVIGPSPKKVPPLVKTSSKLSVMKKREEEEEGGGKTNLSINASVSPKKEFLTPSST
DRKSKLRTGSVTMVTTPTTLKTSPKKESTSPEESEKKRGNSSAFRSFLNRDGPRALGSKP
IPTGAENCLEGCVFVISGVLESMEREDAKSLIERYGGKVTGNISKRTTYLVMGRDGGVTK
TEKAEGFGTKILDEDGLLELIRSTPGKKSKYLIAAEAENKGFKSRTPDTKTTSRTPKQSP
KTRSMTPSPSKPGSASGRGVRVGDSVTLPGRGTGSGVKRGLDLGGKSQSSSSSATLKSSP
ANEGKDSLLWVDKYRPQNLKAVIGQQGDQSQANKLLRWLKNWHTHHAVGGAKPAGRGFGK
FTSTKDNGSSFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKQVIAES
LNNTSINNFYTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKQSRIPIICMCND
RNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKVPPPALNEMILASNQDIRQV
LHNLSMWSAKDKVMTYDRVKEDANNARKDMKLGPFDVCRKVFSKGEESGHMTLIDKSDLF
FHDYSLAPLFVQENYIHVRPAAAGGDVKSHLVLLSKTADSICDGDLVDRQIRSKQAWSLL
PTQAIYSSVLPGELMSGYMNCFPSFPSWLGKFSSGNKHSRIIQELASHMSLKTLSSRQAV
SLDYLPYLRMALLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSLMEISLWGGQPDPYAKL
DPKVKSAFTRAYNRETHLTPYSLQPIKKGRRGGGVEAEPGGEGQEEQPEEEEEEEGVAAD
AMIKLKKAKPSKEPKKEKTTAGDSGKGKGKGKGKARK
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgtatcaagcaaacccgcagcacagaaaccatctcaggat
ggaaccctcaacacagagaaggagtccacgaagaagaagaagcaatctgtctcaacagac
gaagaagtgaagaagaagaaacctgccaccaagatcaccagccccaaggtggagaagaag
aagaagaaggacaatgagagaaagaggcgtgctgtcattgagtcagactctgaggaggag
gtagtgaagcagaaggcccagaaaccaaaccttcctcttcctccggctcctcttcctcct
gccaagaaagaccctgtgcagtacgtctctgagacagattcagacagcgataacttcctg
tctctgaagaagtcccaggctaagccccagggtaatggagtgcccaaaccaggaaaggcc
cgccccgggaccaaagagagccacaggtcccccccgaaacccacccttgttcccgccaca
gggaaaggagggatgaagaagtctcctccagcccccgtcacccctaaatcagcgcccccg
cagaccaaacgcacccccacctctgtcctggactactttggcagtgggagtgtgcagcgg
tcggacaggagactggtggccagtaccaagaggaaaactctctctcaggaccctgatgag
tcgctgactgatgaggtcatcgcccagcagctacagatggacgaggacatggagttggag
aggcaggtccacgaggacgaggagtttgccaagacgctggccatgttggaccaacaacca
cacgccaaaaaggctcgtaaatactctggtgaggatctggggtctgccacgtcagccaac
aaaagcagcgctaactcctcccacagcaacaccgccagccaatcacagcccaatgggcgg
gatcacaaccaggacgtgatcgggccgtcccctaaaaaggtcccccctcttgttaagacc
agttccaaactgtccgtgatgaagaaaagggaggaggaagaggaaggaggaggcaagaca
aatctgagtatcaacgcgtctgtctctcccaaaaaggagttcctaaccccttcgagcaca
gacaggaagtccaagctcagaacaggaagtgtaaccatggtgaccacgcccacgactctt
aaaacctcccccaagaaagagagcaccagtccagaggaatcggagaagaagcgagggaac
tcctcagccttccgtagtttcctgaaccgagacggacccagagccctgggatctaaaccc
atacccactggagcagagaactgcctggagggatgtgtgtttgtgatctctggtgtgttg
gagagtatggaacgtgaggatgctaagtccctgatagagcgctatggagggaaggtgacc
ggtaacatcagtaagaggacgacatacctggtgatgggcagagatggaggagtcaccaag
actgagaaggcggaggggtttggaacaaagatcctggatgaggatggtctgttggagctc
atcagaagtacaccagggaagaagtccaagtacctgattgctgccgaggcagagaacaag
ggatttaagagcagaacaccggacaccaagaccacctcccgcacccccaaacagtccccc
aaaactcgctccatgacccccagcccctccaaacctggctcagcgtcggggcgaggagtc
agggtaggggacagcgtgaccctcccagggaggggtacaggttcaggggtcaaaagaggg
ctggacttggggggtaagagccaatcatcttcctcctctgccactctgaaatcttcaccc
gcgaatgagggcaaagacagtctgctgtgggtggataagtaccgcccccagaatctgaag
gctgtgattggtcagcagggagaccagagccaagccaataagttgcttcgctggctgaag
aactggcacacccaccatgcagtgggaggggctaaaccagcagggagagggtttggtaag
ttcaccagtactaaggataatggttcgagcttcaaggcagccctgttatctggacctcct
ggcgtgggcaagaccaccacagctgccttggtctgtgaggagctgggttacagctatgta
gagatgaatgccagctgtactcgcagtaagaacagtctgaaacaggtgatcgctgagtct
ctgaacaacaccagtatcaacaacttctacacaggttcgtctcagacagtcagtagtaaa
catgttctcatcatggatgagatagacggcatggccggcaacgaagaccgcggaggaata
caggagatgataggtctgattaaacagtccaggatccccatcatctgtatgtgtaatgac
cgtaaccaccaaaagatccgctctctggccaactactgctttgacctgcgcttccagaga
ccacgactggagcagatcaagggtgccatgatgtccattgctttcaaagagggtctgaaa
gtcccgcctcctgccctcaacgagatgatcctggcatccaatcaggacatccgacaggtc
ctccacaacctgagcatgtggtcggctaaggacaaggtcatgacctacgaccgggtcaaa
gaggacgccaacaacgcacgcaaggacatgaagttgggtccgttcgacgtgtgtcggaag
gtgttctccaagggggaggagtcaggtcacatgacgttgattgacaagtcggacttgttc
ttccacgattactccctggcccccctcttcgtccaggagaactacatacatgttagacct
gctgctgctggtggtgatgtgaagtcccacctggtcctcctcagtaagacagctgattct
atctgtgatggagacctggtggacagacagatacgttccaaacaggcctggtctctactg
cccacacaggccatctattccagtgtgttaccaggagagttgatgagtggttatatgaac
tgcttcccctcgtttccctcctggctgggaaagttctcctccggcaataaacactcccgg
atcattcaggagctggcctctcacatgagcctcaagacattaagtagcagacaggcagtg
agcctggactacctcccgtacctccgcatggccctgttgtgtcctcttcagaggcagggg
gcggagggggccggtcaggccgtccagctgttagacgactaccacctggtcagagaggat
gtggacagcctcatggagatcagcctctggggggggcagcctgacccctacgctaaacta
gaccccaaggtgaaatcagcgttcacgagggcctataaccgggagacccacctgacaccg
tactccctccaaccaatcaagaagggccgtcgtggcgggggggtggaggcagaaccggga
ggagaggggcaagaggaacagcctgaggaagaggaggaggaggaaggtgttgcagctgac
gccatgatcaaattgaagaaggccaaaccctccaaggagcccaagaaggagaagacgaca
gccggggattctgggaagggaaagggcaaaggcaagggcaaagccaggaagtga
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