Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419210
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Entry
139419210 CDS
T10872
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04517
IgSF CAM signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139419210
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139419210
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139419210
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
139419210
Intermediate filaments
Intermediate filament-binding proteins
139419210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
PH
PH_9
T3SS_HrpK1
Motif
Other DBs
NCBI-GeneID:
139419210
NCBI-ProteinID:
XP_071025292
LinkDB
All DBs
Position
10:32397266..32424581
Genome browser
AA seq
1609 aa
AA seq
DB search
MLMGAGRDTARDEAQKLHRKWLKHQAFMAELARNKEWLAKIEQEGQELIDEKPELRSVVQ
QKLEEIRECWTDLESTTKAKARALFENNKPEPVVKSYSDLDHQLSGLEKQPPQLEQAHHL
PTFNEQLQKFQSQMGNLYKDDGELGSLQGVCLPQRGSLVKGGEGEGGEQPAVVETRIVRL
IEPLKERRRILLASKEMHQVAQDLEEEILWIQERLPLASSKDYGNNLQSVQQHVKINQTL
QRDLQGRQARVEEVLDRAGIIASLRTPEVDFVREGAGHVRQVWEVLRLEAERRSVMLDVV
LLAQQYYSEAAKVESWLAGQKLHLINEEKGTDEESTLQLLKEHLALEATVENYAETVGML
SQQCQRQLELGHPDSEGITKQQSHIDRLYVSLKDMVEHRKTKLEQQYWMYQLNREVEELE
KWITEREAVASSTELGQDLEHVTMLQEKFTKFCSETNSIGQQRMEQVNKMVNEMIDCGHT
DAATIAEWKDGLNESWADLLELMETRRQMLAASHQLHKFFTDCKEVLAQTAGKMRQLPEV
RACQASIANPATLQRLMLSFEHALQLLVSQVRQLQENAAQLRTIYAGEKAEAIMSKEQEV
MSAWKELLVSCEASRVQVTSVTDKVQFFSVVREQLMWMEGIMGQIGGDDPRDSSSAEVMM
KQHGELKAKMDGRRKTIQQCVELGKILLAAGNPASEEIKEKLDALLAKQKDLSERWDKQQ
EKLQRKKDQFQYAQETVKAEAWLKAKEPLISSSSSSRVAGGAGGDAQVQTDEVEQLILRH
EAFRNAAATWKERFSSLRQLSNAEKLREEQSSKPSPMPLSSRRMFPSSCLTPTIPLATST
LLRQTVQVHIEPRPKQTSLEMSASASSAAQRLGSTIVSYAPVINGSGYHGLDNQSSSGGL
ESSNYPGLNHPGSGGVDSSSSYLGGNHQTGSPPVDSSGYLGLNHQNSGGMVSPGYLPQNQ
SSGGMCGPGYLPQNQISGSMGSPGYLPQNLSSGSMGSPGYLPQNQSSGGMGSPGYLPQNQ
SSGGMGSPGYLPKNQSVGGMCSPGYLPQNQSSGGMVSPGYLPQNQSSGGMCSSGYLPQNQ
SSGGIGSSGYLPQNQSSGGMGSSGYLAQNQNSVGIGSSGYLGKNQSSGGMGSTGYLAQHQ
GSGSMGSSGYLAQSVGGMGSSSYLPQSGGVMDPKMAYAWQHLKADCMQPRINHMHKAVNP
LLEASRAQREQFGDIPMVDMIGPESGLDLLHGRLQRDPRGSRSDPQMDHLRREREYKLGR
QTSSEQEIQARLNELPMIVRQERYRRRLERQSSSEQEGSGKARTPRQDDSSDMESAKEGS
DKRSIEKRATTMAEIVEQAQEREAAQARGEMYRPTSSLSAPVTYERPRARDRPKPRRRPR
PKEPEEKRRSRSAPAQSPAQLLPPSHTAHNEGFLYRKHDFEGHQKSPSSKSWVNLYCVLS
KGGITFYKDAKSTTTPYNEETPLDLSVCICDSTIGYKKKKNVFVIKKNDGNDYIFHAKDE
EDLKAWVTNITTSITEHEEIAKWDKPTTSSTDPDRSERKEKSEGDADARSERSEMGGEVE
EEERSEKERSEKGDGSKKTGEGSEKADTSERGERAEGGAGGSSTSGKSK
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atgcttatgggtgcgggacgagacacggcgcgggatgaggcccagaagcttcacaggaag
tggctgaagcaccaggccttcatggccgagctggcccgcaacaaagaatggctggccaag
atagagcaggagggccaggagctgatcgatgagaagccggagctgcgttcggtggtgcag
cagaagctggaggagatcagggagtgctggacggacctggagagcaccaccaaggccaag
gcccgggctctgtttgagaacaacaagccagagccggtggtgaagagctactcagacctg
gaccaccagctctctggcctggagaaacagcccccccagctggagcaggctcatcaccta
cccaccttcaacgagcagctgcagaaatttcagtctcagatggggaacttgtacaaggac
gatggggaactaggatccctccagggggtgtgcctcccccagcgaggcagcctggtgaag
ggtggcgagggagaagggggcgagcagccagccgtagtggagacccgcatcgtgcgcctc
atcgagcccctgaaggagagacgacgcatcctgctggcctccaaagagatgcaccaggtc
gctcaggacctggaggaagagatactgtggatccaggagcggcttcctctggcctcctct
aaggattacggcaacaacctgcagagtgttcagcagcatgtcaagatcaaccagacactg
cagagggatctgcaggggcgccaagcacgggtggaggaggtgttggaccgggcggggatc
atcgcctctctgcggacccctgaggttgactttgtgcgtgagggggcggggcatgtgcgt
caggtgtgggaggtgctgaggctggaggcggagaggaggtctgtgatgctggatgtggtg
ctgctggcccagcagtactacagcgaggcagccaaggtggagtcctggctggcaggccag
aaactgcacctcatcaatgaggagaagggcacggacgaggagagcaccctgcagctgctg
aaggagcacctggccttggaggcgacagtggagaactacgctgagacagtgggcatgctc
tcccagcagtgtcagcgacagctggagctggggcaccccgatagtgaggggatcaccaag
cagcagtcccacatagaccgtctgtatgtgtctctgaaggacatggtggagcacaggaag
accaagctggagcagcagtactggatgtaccagctcaacagagaggtggaggagttagag
aagtggatcactgagagggaggccgttgccagctccactgagctgggtcaagacctggag
catgtcacgatgctacaggaaaaattcaccaagttctgctcagagaccaacagcataggc
cagcagaggatggagcaggtgaataagatggtgaatgagatgatagactgtggccacacg
gacgcggccaccatagctgagtggaaggacggactgaacgagtcatgggccgacctactg
gagctcatggagacccgaagacagatgctggcagcatcacaccagctgcacaagttcttc
accgactgcaaagaggtcttggctcagactgcggggaagatgaggcagttgccagaggtg
agggcgtgccaagccagcatcgccaaccctgccaccctgcagaggctcatgctctccttc
gagcacgccctccagctgctcgtctcacaggtaaggcagctgcaggaaaatgcggcccag
ctgaggaccatctatgccggagagaaggctgaggccatcatgagcaaagagcaggaagtg
atgtcagcatggaaggagttactggtttcctgtgaggccagtcgtgtgcaggtcacctcg
gtgacagacaaggtgcagttcttctcggtggtgcgcgagcagctcatgtggatggagggc
atcatgggacagattggaggggacgaccccagggactcgtcttctgcagaggtgatgatg
aaacagcatggtgagctgaaagccaagatggatggccgtaggaagacaatacagcaatgt
gtggagctgggaaagatcctgctggccgcaggcaacccagcctccgaggagataaaggag
aagttggatgcgctcctggctaagcagaaggatctctctgagagatgggacaaacagcag
gagaagctacagcgcaagaaggatcagttccagtatgcccaggagacggtgaaggcggag
gcctggctgaaggccaaggagcccctgattagctccagctcctcctctagggtggctggg
ggggctggaggagacgcccaggtccagactgatgaggtggagcaactcatcctccgccac
gaggccttccgcaatgctgcagccacctggaaggagcgtttcagctcactgagacagctc
tccaatgcagagaagctgagagaagaacagagcagcaagccttccccaatgccactctcc
agtcggaggatgttcccatcatcctgtctcactccgaccattcctcttgctacctcaact
ctgctgagacagacggtccaggtgcatattgagcccaggcccaagcagaccagtctggag
atgtctgcctctgcctcctctgcagcccaaaggttgggttctaccatagtcagctatgct
cctgtcataaatggctctggttaccatggactggacaatcagagcagcagcgggggattg
gagagttccaactaccctggactgaaccatccaggcagtggaggagtggacagcagctct
agttaccttggaggcaaccatcagactggctccccgccagtggatagttctggctacctt
ggactgaaccatcaaaacagtgggggtatggttagtccaggctacctacctcaaaaccaa
agtagtgggggtatgtgtggtccaggctacctacctcaaaatcaaatcagtgggagtatg
ggtagtccaggctacttgccgcaaaatctaagtagtgggagtatgggtagtccaggctac
ctgccacaaaatcaaagtagtgggggtatgggtagtccaggctacctgccacaaaatcaa
agtagtgggggtatgggtagtccaggctatctgccaaaaaatcaaagtgttgggggtatg
tgtagtccaggctacctgcctcaaaatcaaagtagtgggggtatggttagtccaggctac
ctgccgcaaaatcaaagtagtgggggtatgtgtagttcaggctacctgccgcaaaatcaa
agtagtgggggtataggtagttcaggctacttgccgcaaaatcaaagtagtggtggtatg
ggtagctcaggctaccttgcacaaaatcaaaacagtgttgggattggtagctcaggctac
cttgggaaaaatcaaagtagtgggggtatgggaagtactggctaccttgcacagcaccaa
ggtagtgggagtatgggtagttcaggctaccttgcgcaaagtgttgggggtatgggtagt
tctagctatctgcctcaaagtggtggggtcatggaccccaaaatggcatatgcgtggcag
catctgaaagctgactgcatgcagcccaggatcaaccacatgcacaaagctgtcaacccc
ctcctggaggccagcagggcgcagagggaacagtttggggacatccccatggtggacatg
atcgggccagagtctggcctggatctcctccacggcaggctccagagggaccctcgcggc
agccgctccgacccccagatggaccacctgcggcgggagagggagtacaagctgggtcgc
cagacctccagcgaacaggagattcaggcgcgcctcaacgagctgccaatgattgtgcgc
caggagcgctataggcgacgcctggagaggcagtcgtccagcgagcaggagggcagtggg
aaggcgaggacaccgaggcaggacgactccagcgacatggagtcagccaaggaaggctcc
gacaagcgctcaatagagaagagagccaccaccatggctgagattgtggagcaggcccag
gagagagaggcagcacaagctcgaggggagatgtaccgccccaccagcagcctctcagca
cccgtgacctacgagcgcccgcgagcccgagaccgccccaaaccccgcaggagaccccgc
cccaaagagcctgaggagaagcgacgctctcgctcggctccggcccagagcccggcacaa
cttctgccaccctcacacactgcccataatgaaggcttcctgtaccgcaaacacgacttt
gaggggcaccagaagagtcccagcagtaagtcctgggtgaatttgtattgcgtgttgtca
aagggagggatcactttctacaaggacgccaagagcaccaccacaccttacaatgaagaa
accccactcgacctgagcgtctgtatatgtgatagcaccataggatacaagaagaagaaa
aatgtcttcgttatcaagaaaaatgatggcaatgactatattttccatgcaaaggatgag
gaggacctgaaggcttgggtcactaacatcaccaccagtataactgaacatgaggagatc
gccaagtgggacaagcccaccacctcgtccacagatcccgaccgctcggagaggaaggag
aagtcagagggcgacgcagacgccaggtcagagaggtctgagatgggaggagaagtggag
gaggaggagaggtcagagaaagagaggtctgagaagggagatgggtccaagaagacggga
gaaggctcagagaaagcagatacgtcggagaggggtgagagggcagaggggggggcaggg
ggctccagcacgtcagggaagagcaaatga
DBGET
integrated database retrieval system
