Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419477
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Entry
139419477 CDS
T10872
Name
(RefSeq) cell adhesion molecule 1-like isoform X1
KO
K06781
cell adhesion molecule 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139419477
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139419477
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
Nectin family
139419477
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
V-set
C1-set
C2-set_3
Adhes-Ig_like
DUF3439
KOW2_Spt5
Syndecan
Motif
Other DBs
NCBI-GeneID:
139419477
NCBI-ProteinID:
XP_071025527
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Position
10:complement(23527208..24049050)
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AA seq
429 aa
AA seq
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MAITGNGSLATLLFLFVIPAALHKGAAQYPVQSQNLVTDNVEVMEGDVAVISCRVKNNDD
SVIQLLNPNRQTIYFRDVRPLKDARFQLVNFSDNELRVSLSNVSLSDEGRYVCQLYTDPP
QEAYADITVLIPPGNPIIESREGQVIEGNETEMTCTAMGSKPAATIRWMKGDKELQGISK
VEETYDHMFTVTSQLRFIVTKEDDGVPVVCIVDHPAVKDFQALTYLVVHYKPEVKIIVEF
PDGLPREGQNMELSCQAKGKPHPQQINWVKVDDDLPSHALITGPDLYIENLNKTYNGTYR
CFAANSVGESYDDYILYVYDAPTTTPIPTTATTTIPTTTISLPEATADSRAGEGAPRAVD
HAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGHNN
SDEKKEYYI
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcacaggcaacggatctctcgctactcttctctttttgttcgtgattccagca
gctcttcacaaaggagctgctcagtacccagtccagagtcagaacctggtgacagacaat
gtggaggtgatggagggtgacgtggccgtcatcagctgcagggtgaagaacaacgacgat
tctgtcatccagctcctcaaccccaacagacagaccatctacttcagagacgtccgaccc
ctaaaagatgctcgcttccagctggtcaacttctcggacaatgagctgcgggtgtctcta
tccaatgtgagcctgtcggatgaggggagatacgtgtgccagctctacacggacccccca
caggaggcctatgcagacatcactgtgctgatccctccaggcaacccaatcatcgagtcc
cgggaggggcaggtgattgagggcaacgagacagagatgacctgcaccgctatgggcagc
aagcccgccgccacaatcagatggatgaagggagacaaagagctccaaggcatatccaag
gtggaggagacatatgaccacatgtttactgtgaccagccagctgaggttcatcgtcact
aaggaggacgacggcgtgcctgtggtgtgcatcgtggaccacccagccgtcaaagacttc
caagccctgacgtacctggtggtgcattataaaccggaggtgaagataatagtggagttt
cctgatgggctgccaagggagggacagaacatggagctgtcatgccaggccaaaggcaaa
ccccatccccagcagatcaactgggtgaaggtggacgatgaccttccctcacacgccctc
atcaccggcccggacctgtacatcgagaacctcaacaagacctacaacggcacctaccgc
tgcttcgctgccaactcagtgggcgagtcgtatgacgactacatcctctacgtctacgat
gcccccaccactacccctatacccactacagctaccaccacaattcccaccaccaccatc
tctctccctgaagccactgcagattctagagctggagagggagcaccgagagcggtcgac
catgctgtcatcggaggagtggtggctgtggttgtctttgccatgctctgtctactcatc
attttgggacggtactttgcaagacacaaaggtacctacttcacgcatgaagctaaagga
gccgacgatgcagcagatgcagacacagccattatcaacgcagaggggggccacaacaat
tcggacgagaaaaaggagtactacatatag
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