Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419541
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Entry
139419541 CDS
T10872
Name
(RefSeq) tumor necrosis factor receptor superfamily member EDAR-like
KO
K05163
tumor necrosis factor receptor superfamily member 27
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139419541
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
ocla04050
]
139419541
Cytokine receptors [BR:
ocla04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
139419541
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
DACNK
Ephrin_rec_like
Motif
Other DBs
NCBI-GeneID:
139419541
NCBI-ProteinID:
XP_071025605
LinkDB
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Position
10:complement(37425627..37434749)
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AA seq
525 aa
AA seq
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MDCSQTQYYLSGDCHPCLQCGPGQELSEDCGYGSGWSASCIPCSVKTYKEGWGYHNCKFC
QSCKHINRHQKSLCTSKSNAICGECLPGFYSKTRMDGLQELECMPCGPSSTTEQQCSRSR
RVDVGKVWSPEGPAQNAAVITTISFTLVTMTIFLSAALFIYFRHTLLKKIFKGCLAPQST
SQSDMECAASPVNVVTLNLEQQSQDSGACDNSTTTADMLARLQSNVDMTVPLGFILLNPD
LKTQDQINLLETQPLVRNSTCSNCSSGFVSQISSEPSSISSGDVSLTMETPVGPVNSGES
EAGSFFLPLQSSEGYDASELQDSPPYQHVPVECTELDFHSTAALHSATDPDCSSVSLGIT
AISKIKDGPSGDGSGGRQLRSPSACPEEQTDSCWSSHHQPCYSSNAMEETLSLLKKCIRI
MQGVHLGRLPQALVDTLALKLDPTFPGVQNYQQVALKMGVPHKLLKGLCGFDHVFRYLSS
CTLLTVPDLLHTFYLLQRLDTLLLLCEYAMQSQTQSQVTGCTFYC
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggattgttctcaaacccagtactacttgagtggggactgccacccttgtctgcaatgt
ggaccaggacaagagctgtcagaggactgtggttatggaagtggatggtcggcttcttgc
atcccctgtagtgtcaagacttataaagagggctggggttaccacaactgcaaattctgt
cagtcgtgtaaacacataaacaggcaccagaagtcactgtgcacctctaagagcaatgct
atctgtggggagtgcttgccaggattctacagtaagacacggatggatggcttgcaggaa
ttggagtgcatgccgtgtggtccctcctccaccactgagcagcagtgcagccgaagcaga
agagttgatgtgggaaaagtctggagcccagaaggcccagcccaaaatgctgctgtcatc
accaccatttctttcaccctggttaccatgacaatcttcctctccgctgccttgtttata
tacttcagacataccttactaaagaaaatatttaaaggatgcctggctcctcaaagcaca
agtcagagtgacatggagtgtgcagcatccccagtgaacgtggtcacgctgaatctggag
cagcaaagccaggactcgggtgcatgtgataactctaccaccactgcagacatgttggcc
agactgcagtccaatgtggacatgactgtccctctggggttcattctactaaatcctgac
cttaaaactcaggaccaaatcaacctgctggagacccagccactggtgcgtaactccacc
tgcagtaactgctcctctgggtttgtctctcagatatcctctgagccctcctcaatcagc
agtggtgatgtctcacttacaatggagactcctgtgggtccagtaaacagtggggagtct
gaggcagggtcctttttcctgcccctgcagagcagtgagggttacgatgcttctgagctg
caggatagccctccctatcagcatgtaccagtggagtgcactgagctagacttccacagc
actgcagccctccacagtgccacagacccagattgtagctctgtgagcctggggattact
gcgatatccaagattaaggatggcccttctggagacgggtcaggaggaagacaactgagg
agtccgtctgcctgcccagaggagcaaactgacagctgttggagcagccatcatcaaccc
tgctacagcagtaatgcgatggaagaaacactgagcctgctgaagaagtgtatccgaatc
atgcaaggtgtccatctaggcaggctgccacaggccttggtggatactctggctttgaag
ctggacccaacattcccaggagtacagaactaccagcaggtggcgctgaagatgggcgta
cctcacaagttgctcaaaggcctgtgcgggtttgatcacgtctttcggtacctttcctcc
tgcactctgctaacagtacctgacctgctccacacgttctacctgctgcagcggctcgac
actctgctcctgctgtgtgaatacgccatgcagagccagactcagagccaggtcacagga
tgcacattttactgttaa
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