Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419563
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Entry
139419563 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit beta-4-like
KO
K05192
gamma-aminobutyric acid receptor subunit theta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139419563
04082 Neuroactive ligand signaling
139419563
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139419563
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139419563
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Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
Motif
Other DBs
NCBI-GeneID:
139419563
NCBI-ProteinID:
XP_071025635
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All DBs
Position
10:complement(42503693..42562976)
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AA seq
512 aa
AA seq
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MLGPQEDKLCGMFSALAALSFVCFVQSTSTGQTGISVAKATVDKLLKGYDIRLRPDFGGA
PVIVGMSINIASIDSISEVNMDYTITMYFQQSWRDKRLAYAELPLNLTLDNRVADQLWLP
DTYFLNDKKSFLHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEI
ESYGYTTDDIVFYWHGGDNAVTGVDKLELPQFSIVALRLVSREVRFTTGSYPRLSLSFRI
KRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGVTTVLTMTTINTHLRETLPK
IPYVKAIDVYLMGCFVFVFLALLEYAFVNYVFFGRGPQQQKKIHERLNKTNNERPRYEEK
RLREQDSIATPFQTNTLRSYTQRRNLYLEEQRKVGVDAYGNILLTTLEMNNEVMPSDVGS
SVSDSRNSVMSFDSSGVQFRKPMAPRDGFSHHSLDRSAMRSRANCRLRRRSSKLKLKIPN
LADVSTIDKWSRVLFPIMFGFFNLIYWLYYVN
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgttgggtcctcaagaagataaattatgtggaatgttctctgctttggcggctctgtcc
ttcgtttgctttgttcaaagcacctccactggacaaaccggaatatctgtggccaaggcc
acggtggacaagttgctgaaggggtatgacatccgtctaaggcctgattttggaggtgcc
ccagtcatcgtaggaatgagcatcaacatcgctagcattgactccatctcagaagtgaac
atggattacaccatcacaatgtatttccagcaaagttggcgagacaagcggttggcatac
gctgagctgcccctcaacctgactctggataaccgcgtagcagaccagctgtggctccca
gacacctacttcctcaatgacaagaagtccttcctgcatggcgtgacagtgaagaaccgt
atgattcgactgcatcctgatggcaccgtgttatatgggctcagaataaccaccacagca
gcttgcatgatggatttgaggaggtaccccctcgacgaacagaactgcaccttggaaatc
gaaagctatgggtacaccacagacgacatagtgttctactggcacggaggggacaatgcg
gtgacgggggtggacaaactggagcttccccagttctccatcgtggcgcttcggctggtg
tccagggaggtcaggtttaccacaggttcctatcccaggctatcactgagtttcaggatt
aagaggaacattggctacttcatcctgcagacatacatgccctccatcctgatcaccatc
ctctcctgggtctccttctggatcaattacgatgcctctgcagctcgggtggcccttggt
gttacaacggtgctcaccatgacaaccattaacacccaccttagggagaccctcccaaag
atcccgtatgtgaaagccatcgacgtctacctcatgggctgttttgtgtttgtgttcctg
gccctgctcgaatatgccttcgtaaactacgtgttctttggccggggcccccagcaacag
aagaaaatccacgagcggctgaacaaaaccaacaacgagcgcccgcgatacgaagagaag
cgcctgagagaacaggactccattgccacgccgtttcaaaccaacaccctcaggtcatat
acacagagaagaaatctgtacctcgaggagcaaagaaaagttggggtggacgcatacggg
aatatcctgctcaccacgctggagatgaataacgaggtgatgccgtcagatgtgggaagt
agcgtcagtgactcccggaattcagtgatgtcattcgacagctccggggtccagttcagg
aagcccatggctccccgggacggcttcagccaccactcactggaccgcagcgctatgcgc
agcagggccaactgtcggctacgacggcgctcatccaagctcaagctgaaaatccccaat
ctggcagatgtcagcaccattgacaaatggtcccgggtccttttccccatcatgtttgga
tttttcaacctaatctactggttgtactatgtgaattga
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