Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419588
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Entry
139419588 CDS
T10872
Name
(RefSeq) ATP-dependent translocase ABCB1-like isoform X1
KO
K05660
ATP-binding cassette, subfamily B (MDR/TAP), member 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139419588
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139419588
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
139419588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_21
RsgA_GTPase
Rad17
AAA_16
AAA_5
AAA_7
AAA_29
AAA_28
AAA_25
Zeta_toxin
ECH_2
Motif
Other DBs
NCBI-GeneID:
139419588
NCBI-ProteinID:
XP_071025663
LinkDB
All DBs
Position
2:5543568..5566577
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AA seq
1341 aa
AA seq
DB search
MGREDGDMPDSLPTIPEEVFAKGYPNLAFHEDKKPQERMTEGQPTVDTERKPKKGLGRKK
KEPAKAVGFFQLFRYATGCEVLLMIIGLLCAALHGIALPLMCVVFGQMTDSFVQSGQQLN
FTANFTVEEISAILNSTDGCIQIPGVDIEALMTRHAYYFIGIGCAVFLLGTFQVMLFLLT
ATKQTKRIREKYFHAILHQQMSWFDTHQIGVLNVRLTDDINTINEGLGDKICVFVQFFCT
FLSGFIIGFIFGWKLTLVILTVSPLLAGSAAVWSKILATLTSKELSAYAKAGAVAEEILV
AIRTVVAFNGQKKAVERYERNLEDAKNFGIKKAITTNVSMGFTQFVIFGTYALAFWYGTK
LSVDEPENYTIGKTITVFFSVMIGAFSLGQGAPNLEAIAKARGAAYEVYNTIDQPRPIDS
SSKEGHKPDCVKGDIEFKNIHFSYPSRKDVKILEGVNLTVPRGKTIALVGASGCGKSTTI
QLLQRFYDPDSGEITLDGRDIRTLNVKWLRENMGIVSQEPVLFGTTIAENIRYGREDATD
EDIERAVREANAYDFISKLPDKLNTMVGERGAQLSGGQKQRIAIARALVKNPKILLLDEA
TSALDTQSESVVQAALDKARAGRTTIVIAHRLSTIRTADVIAGFSNGEVVEQGTHRELMA
KKGVYYSLVMQQSQGKPEEDEEDPVEEDNPPKYEDLDYVLYDSSDMDELEVGNEEGIENG
GFEKNSISSGRVEMKPTRRKSKKSKKDKKKEKKPDEAPDIPFTRILALNKPEWPYMLVGT
LSSLVGGAVYPCVAIIFAKIIGVFSEVDPEVKRQKTMMFSLLFLLIGGVAFVTYFLKGYM
FGKSGELLTMRLRRQVFHAMMRQEIGWFDDNNNAVGVLTTRLATDASLVKGATGSRLGLA
TNTVCALTIAIVVAFIHSWQLTLLILACVPFLIGANFIQMRAMAGHASKDQGALEQSGKI
STETVENFKTVVGLTREDVFFHKFMDSLERPYQNGLVKAPIYGLTFAVAQAIPYMVNAAI
FRFGSWLIAHCHTEYENVFLVFSVIIFAAMNIGESASFAPDFAKAKAAAGRILGLLEKKP
EIDIYSEEGEKPTDFVGDIEFRGIHFAYPTRQNVRVLQGLNVSVGPGQTLALVGESGCGK
STSIQLLERFYSPAEGQVLVDGLDTKTLNLSWLRSQLGLVSQEPILFDCSISENIQYGDN
SREVSQDEIEEAAKNANIHDFIMGLPEKYNTRVGDKGTQMSGGQKQRIAIARALVRQPKV
LLLDEATSALDTESEKIVQQALDAARQGRTCIVIAHRLSTIQNADQIAVIQYGQVTEQGT
HTDLMAKGGAYYALVNAQVNH
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggggagagaggatggggacatgccagactctctaccaaccatccctgaggaggtattt
gcaaaaggctaccccaacctggccttccatgaggataagaagcctcaggagcggatgaca
gaggggcagccaaccgttgacacggagcgcaagccaaagaagggcctcggaaggaagaaa
aaagaaccagccaaagcagtgggatttttccagttgttccgctacgctactggttgtgag
gtgctcctgatgataatcggcctgctatgtgctgccctccacgggatagccctgcccctt
atgtgtgttgtgtttggacagatgaccgacagctttgtacaaagtggacagcagctcaac
tttacagccaatttcactgtggaggagatcagcgctatattgaactcaactgacggatgt
attcaaattcctggagttgatatagaggctctaatgactcgacatgcctattacttcatt
gggatcggttgtgctgtgttcctgctggggacctttcaggtgatgttgttcttgttgaca
gccaccaaacagaccaaacggatccgggagaaatacttccatgccatcctccaccaacag
atgtcctggtttgatacacaccagataggagttctcaacgtcaggttaacagatgacatc
aacacaatcaacgaaggccttggagacaagatctgtgtgttcgtgcagttcttctgcacc
ttcttgtcagggttcatcattggtttcatcttcggctggaagctaaccctcgtcatcctg
accgtcagtcctctcctggcaggatcagctgccgtctggtccaaaatacttgccaccctg
accagtaaggagctgtctgcctatgccaaagcaggggcggtagctgaagagatactggtg
gctatcaggacagttgtggctttcaatggacagaagaaagctgtggaaaggtatgaaaga
aacttggaggatgctaaaaactttgggataaagaaagccatcaccactaatgtgtccatg
ggcttcacccagtttgtcatatttgggacgtacgccttggctttctggtacgggaccaag
ctctctgtagacgagcctgaaaactacaccattggaaaaaccattacagtcttcttctcg
gtgatgattggggcgttctctttgggccagggtgcgcctaacttggaagccatcgccaaa
gcccggggtgctgcctatgaagtctacaataccattgaccagccgcggcccatagacagc
agttcaaaggaaggtcacaaaccagactgtgtgaaaggagacattgaattcaagaacatc
cacttcagctacccctccaggaaagatgtcaaaattcttgaaggagtgaatctgacagtg
cctcgtgggaagaccatagctctggttggagccagtggatgtgggaagagcaccaccatt
cagctgcttcagcgcttttatgatccagactcaggagagattaccctggatggtcgggac
atccggaccctgaatgtgaagtggctgagggagaatatgggtatcgtcagtcaggaacct
gtgctgttcggaacaaccattgcagaaaacatccgctatggcagagaggatgccacagat
gaggacatcgaacgggccgtgagggaggccaacgcgtacgacttcatctccaaactcccc
gataagctgaacaccatggtgggggagcggggagcccagctcagtggaggacagaagcag
aggatagctatcgcccgggccctggtcaaaaacccgaagatcctcctgctggacgaggcc
acctccgccctggacacccagagtgagtcggtcgttcaggccgctctggataaggccaga
gcgggccgcaccacaatagtgatcgcccaccgcctgtccaccatcagaacagctgacgtg
atcgctggcttcagcaacggagaggtggtggagcagggaacacacagggaactcatggcc
aagaagggggtttactactctctggtcatgcagcagagtcaagggaagccagaggaagat
gaagaggaccctgtggaagaggataaccctcctaaatatgaggatctggattatgtccta
tatgactcatctgacatggatgagctggaagtgggaaacgaggaaggaatagaaaacggc
ggctttgaaaagaactcaatcagcagtggccgtgtggaaatgaaaccgaccaggaggaaa
tctaagaagtccaagaaggacaagaagaaggaaaagaaaccagatgaagctccagacatc
cccttcaccagaatcctggccttgaacaagcccgagtggccgtacatgttggtaggaacc
ctgtctagcttggtggggggagccgtttatccctgtgtcgccatcatcttcgccaagatc
attggagtgttttccgaggttgacccggaagtcaaacgacagaaaaccatgatgttttcc
ctgctcttccttctcatcggaggagtggcttttgtcacctacttcctaaagggttacatg
tttggaaaatcaggagagcttcttaccatgaggctgaggaggcaggtattccatgccatg
atgagacaggagattggatggtttgatgacaacaacaatgcagtgggagttctaaccacc
agattggccacagatgcatctctggttaaaggggcgactgggtctaggttgggtctggcc
accaacacagtctgtgctctcaccatcgccattgtggtggccttcatccacagctggcag
ctcaccctcctcatcctcgcctgtgtgcccttcctcattggagccaacttcattcagatg
agggccatggcaggccacgcctccaaagaccagggtgccctggagcagtctgggaagata
tctacagagaccgttgaaaacttcaagacagttgttggattgacacgggaggacgtcttc
tttcacaagttcatggacagtctagaaagaccataccagaacggtttggtgaaggctccc
atctacggactaacatttgccgttgcccaagcaatcccttacatggtcaatgctgcaatc
ttccgctttgggtcctggcttattgctcactgtcacacagaatatgaaaatgttttcctt
gtgttttctgtgatcatatttgctgccatgaacataggagaatcagcatcttttgctcct
gactttgccaaagcgaaagcagctgcggggagaattcttggcttgttggagaagaaacca
gagattgacatttacagtgaggagggagagaagccaacggactttgtcggggacattgag
ttccgagggatccactttgcgtacccgacccgtcagaacgtgagggttctccaggggttg
aacgtgtcagtggggcctggtcagaccctggccctggtcggggagagtggctgtggtaaa
agcacctccatacaactactggagcgcttctatagccctgctgaaggacaagtgttagtg
gatgggttggatactaagaccctgaacctgtcgtggctgaggtctcagctgggcctggtg
tcccaggagcccatcctgttcgactgcagcatctcagagaacatccagtatggggacaac
agcagagaggtctctcaggatgagatagaggaggcagccaagaacgccaacatccatgac
ttcatcatgggcctgccagagaaatacaataccagggttggggacaaggggacccagatg
tctggaggtcagaaacagaggatagccatcgccagagcactggtcaggcagcctaaagta
ctgctgctggatgaagccacttccgccctggacacagagagtgagaagattgtccaacag
gctttagacgccgcccggcagggccgcacctgcatcgtgatcgcccaccgcctgtctacc
atccagaacgcagaccagatagcggtaattcagtatggtcaggtgacagagcagggtaca
catactgacctcatggctaaaggaggggcttactatgccctggtcaacgcacaggtcaac
cactaa
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