Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419622
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Entry
139419622 CDS
T10872
Name
(RefSeq) retinoic acid receptor RXR-beta-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03320
PPAR signaling pathway
ocla04148
Efferocytosis
ocla04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
139419622
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
139419622
03320 PPAR signaling pathway
139419622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139419622
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139419622
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
139419622
Nuclear receptors [BR:
ocla03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
139419622
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
139419622
NCBI-ProteinID:
XP_071025706
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Position
2:complement(5944909..5961776)
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AA seq
431 aa
AA seq
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MSSHQPTSSASNSPTSTFGSPFSVISPSLGSPGVAPSMGYGPISSSQINSTMGMHSISSS
DDVKPPFGLRPMSAHSPGIMLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLS
YTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQKSVQEERQRIREREEGLE
CSSAVNEEMPVEKILEAETSVEQRAELHSDTGSAGSSPHDAVTNICQTADKQLFALVEWA
KRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGVLLANELHRDNAHSAGVAAI
FDRESVQSAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSNTGEVEL
LREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MEMLEAPHQLA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcatcagcccaccagttcagcctccaacagtcccaccagcacctttggctcg
cctttctcagtcatcagcccctcactgggctcccctggtgtggcaccctccatgggttat
gggcctattagcagtagccagatcaactctacaatggggatgcactcaatcagcagctcg
gatgatgtcaaacccccgtttggcttgaggcctatgtctgcacacagccctgggataatg
ctctcccagaaacgcatgtgtgccatctgtggagaccgctcctctggtaagcactatggt
gtgtacagctgtgaaggttgcaagggcttcttcaaacgcacagtgcgcaaggacctgagc
tacacctgcagggataacaaagaatgcctggtggacaagcgccagcgcaatcgctgccag
tactgtcgctaccagaagtgtctggctatgggcatgaagagggaagtggtccaagatgaa
cgtcagaaatcagtccaggaggagcgtcagaggatcagggagcgagaggagggactggag
tgcagcagtgctgtgaacgaggagatgcccgtggagaagatcttggaggcagagacgtcc
gtggagcagagggcggagctccactctgatacaggctccgctggtagctctccccatgat
gcggtgacaaacatctgccagactgcagacaagcagctgtttgcgttggtggagtgggcc
aagaggatcccccacttctccgagctgcccctggacgaccaggtcatcctcctgcgtgca
gggtggaatgaacttctgatcgcctccttctcacaccgctccatcgctgtgaaggacggg
gtcctgctggccaatgagctacaccgggacaacgcacacagtgcaggggtggcggccatc
tttgacagggagagtgtgcagagtgctgaggtgggagccatatttgaccgggttctcact
gagctggtcagtaagatgagagacatgcagatggacaagacagagctgggctgcctccga
gccatcgtcctcttcaacccagacgctaaaggtctgtccaacaccggagaggtggagctc
ctgagagagaaggtctatgcgtcactggaagcctactgcaagcagaaataccccgagcag
cagggaaggtttgctaagctcctcctcaggctgccagcactgcgttctattggcttgaag
tgtttggagcacctgttcttcttcaagctgattggtgacacccctatcgacacgttcctc
atggaaatgcttgaagcacctcatcagttggcatag
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