Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419628
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Entry
139419628 CDS
T10872
Name
(RefSeq) transcription factor Sox-19a-like isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139419628
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139419628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
139419628
NCBI-ProteinID:
XP_071025710
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All DBs
Position
10:49898301..49907053
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AA seq
321 aa
AA seq
DB search
MVNMYNIIEHQLKSSVPSHHPGAGMPPANGVGGHEGGHTGSKLPTIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKPMPKNNTLAAQYQMSAGNLLSASAAQGQVGNPRMDAYGWGHTGGYTAAMQ
SEALGYSQQLHRYDLSALQYQSSMAQAQAYMNGANAYSPMSYNSSPQQVSPVMSMVKQQS
DGHSMSPSPTGPHSPLQQHHHQAHQQHQTQRGIQVQGDHLRDMISMYMPGGDASEAQRGY
SVSAANIQQHYLGGSAPLTHL
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatagagcaccaactcaagtcctctgttccttcacatcat
cctggagcaggaatgccacctgcgaacggagtaggggggcacgagggcggccacacaggt
tccaaattaccgacaatccaacctgacccaatggacaaagtcaagcggcccatgaatgcc
ttcatggtctggtctcgcggtgaacgacggaaaatggctcaggaaaatcccaaaatgcac
aattctgagatatccaaacggctgggtgtcgcgtggaaatctctaacagacgccgagaaa
aggcccttcattgacgaggctaaacgcctccgcgcggtgcacatgaaggattatccggac
tacaaatacaaaccccgtcgtaaaaccaaaccgatgccgaagaacaatactctagccgcc
cagtatcagatgtcggccggtaacctgctgagtgcgtccgcggctcagggacaagttgga
aaccccagaatggacgcatatggctggggccacacagggggctacactgcggcgatgcag
agcgaggcgctcggctacagccagcagcttcaccgctatgacctgtcagcacttcagtat
caatccagcatggcccaggcccaagcctacatgaatggtgccaacgcatacagccccatg
tcctacaacagcagcccccagcaggtcagcccagtgatgtccatggtgaagcagcagtct
gatggccacagcatgtccccatcccccaccgggccccacagccccctccagcagcaccac
caccaggcccaccagcagcaccagacccagcgtggtatccaggtccagggagaccatctc
agggacatgatcagcatgtacatgcctgggggagatgcctcagaggcccagagagggtac
tccgtctctgcagcaaacatccagcagcattacctgggagggtcagctccactcacccac
ctttga
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