Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139419664
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Entry
139419664 CDS
T10872
Name
(RefSeq) cyclic nucleotide gated channel subunit alpha 1a
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
139419664
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139419664
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
139419664
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GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
PFF1_TM
NPR3
Sec62
Ion_trans_2
DUF2207_C
Motif
Other DBs
NCBI-GeneID:
139419664
NCBI-ProteinID:
XP_071025749
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All DBs
Position
10:54324903..54336736
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AA seq
678 aa
AA seq
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MISTSSTRPFLAVAPRISPNMATDTEEDSEDEIDETSPGPGRLFNVNNSNNNEEEEKKKK
KKEKKEKKEKKEKKKEKKKQKEQEEKEKEEKEKEEKEKKEKEEKEKKEKEKKEGPKEGFF
INPAGSLYYNWLFIITIPVMYNWTMIIARACFEELQHNHLVTWMILDYISDVLYLADMAF
RTRTAYLEQGLLVKDKKLLLERYISSLQFKLDAVSMLPTDVFYIYLGINYPEIRLNKLLR
ITRMMEFFTRTETKTNYTNLFRISNLVMYIIIIIHWNACLYYSFSKSIGFGSDPWVYPDL
NDPEEPEFGELGRKYSFSLYWSTLTLTTIGETPSPELDSEFFFHVLDFLVGVLIFATLVG
NISSMISNISAARVEFQARIDNIKQYMQKWKVDKELELRVITWFDYLWTNDKAQDERETL
RYLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLIELVLKLQPQVFSPGDYICKKGDIGR
EMYIVKEGKLAVVADDGVKQFCVLGDGSYFGEISILAIKGSKAGNRRTANIRSIGYSDLF
CLSKDDLMESLTEYPEAKGMLEEKGRQILLKDGLLELDPSKIIPETTEIEEKVNRMYSNL
ELMQTKLKKLLGDYSTSQRATRERIAEIERLTGEVVAEEDLDEEEKEGGEEEKEGGEAEE
KKDEEKKEEEEEEEEEKK
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcacatcaagcactcgtccgttcctggcggttgcgcctcgcatttctccaaac
atggccacagacacagaggaggacagtgaggatgaaatagatgaaacctctcctggccca
gggcgtctgttcaatgtgaacaacagtaacaacaatgaggaggaggagaagaaaaagaag
aaaaaggagaagaaagaaaagaaagagaaaaaagagaaaaagaaagaaaagaagaagcag
aaagagcaggaggagaaagaaaaggaggagaaagaaaaggaggagaaagaaaagaaggaa
aaagaggaaaaggagaaaaaggagaaagagaaaaaggaggggcccaaagaagggtttttc
atcaatccagcgggcagtctgtactacaactggctgttcattatcacaataccagtcatg
tacaattggaccatgataatagccagggcctgctttgaggagctgcagcataatcaccta
gtcacctggatgattctggattacatctctgatgtcctctacctggctgacatggccttc
aggaccaggacagcctacctggagcaaggcctgctggtcaaagacaagaagctgctgttg
gagcgttatatcagcagcctccagttcaagctggacgctgtctccatgctgcccaccgat
gtgttttacatctacctggggatcaactaccccgagatccgcctcaacaagctcctccga
atcacgcgtatgatggagttcttcacccgcaccgagaccaagaccaactacaccaacctc
ttccgcatctccaacctggtcatgtacatcatcatcatcatccactggaacgcctgcctc
tactactccttctctaagtccatcggcttcggctctgacccctgggtctacccggacctg
aatgacccagaagagccagagttcggggaactggggaggaagtactccttcagcctctac
tggtccacgctgacgctgaccaccatcggcgagacgccatcaccggagctggactcagag
ttcttcttccatgtgctggacttccttgtgggtgtgcttatcttcgccaccctggtgggc
aacatcagctccatgatctccaacatcagcgccgcgcgggtcgagtttcaggcacgcatc
gacaacatcaagcagtacatgcagaagtggaaggtggacaaggaactggagctgcgagtc
atcacgtggttcgactacctgtggaccaacgacaaggctcaggacgaaagggagacgctg
cggtacctgcccgacaagctcagggccgaaattgccattaacgtccacctggatactctc
aagaaggtccgcatcttcgctgactgcgaagcaggcctgcttattgagctggtgctcaag
ttgcagcctcaggtcttcagccctggcgactacatctgtaagaagggcgacatcggccgt
gagatgtatattgtcaaggagggcaagctggcggtggtggctgacgatggcgtcaagcag
ttctgcgtgctgggagacggcagctattttggggagattagtatcctagcgataaagggt
tctaaggcagggaaccggaggacggccaacatccgcagcattggctactcagatctcttc
tgcctgtccaaggatgacctgatggagtcattgaccgagtacccggaagccaagggcatg
ctggaggagaaaggtcgtcagatcctgctgaaggacggcctgctggaactggacccttcc
aaaattatccccgaaaccacagaaatcgaggaaaaggtgaaccgcatgtacagcaacttg
gagttgatgcagaccaagctgaagaagctgctgggagactacagcaccagccagagggcc
acgagggaacgcatcgctgagatagagaggctgactggagaggttgtagcagaggaggac
ctagatgaggaggagaaggagggaggggaggaggagaaggagggaggggaggcagaagag
aagaaggatgaggagaagaaagaggaggaggaggaggaggaggaggagaagaagtag
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