Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420322
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Entry
139420322 CDS
T10872
Name
(RefSeq) nucleoporin p58/p45 isoform X1
KO
K14307
nucleoporin p58/p45
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139420322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139420322
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139420322
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
FapA
Nup49_C
Tox-ODYAM1
PSY3
JAKMIP_CC3
PBC
Motif
Other DBs
NCBI-GeneID:
139420322
NCBI-ProteinID:
XP_071026392
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All DBs
Position
11:18882696..18894027
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AA seq
594 aa
AA seq
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MSGFNFGSGSIGSTNAGGGFSFGAAASTPVAAGTGGFTLGGALGATAPASTTTTSSLGLG
GSLFSQKPTGGFSFNTPASGAPAASTAPTTGFSMTFNKPSASAQPFSLTAASSAPTGAGL
TLGSVLTSTAPQQGATGFSLNLGGVAASTAPSTGLSLGSSMFSNMATTGLSQSTLGGLGF
ALGLGQTTLGSGGLTLGSLASTSTAVSAAPSLGLGGVDFSTSSEKKSDKSSGASPQDSKA
LKDENLPPVICQDVDNFQKFVKEQKQVHEEISRMSSKAMLKVQDDIKSLKQLLSVSASGL
QRNALAIDKLKMETAQELKNADIALRTQKTPPGLQHDNTAPYDYFRCLVEQFEVQLQQYR
QQIEELENHLTTQGSGSHITPQDLSLAMQKLYQTFVALAAQLQSVHENVKTLKQQYLGYR
RAFLEDSTDIFESKRVASKKWQSAPRITTGPAPFSSIPNAAAVAMAATLSQQQQPGPGSQ
VSLGSGLGNPFALGVGSSLGTSGLGVFGGGPGFGGVATGGSSFGFSSASKPSGGSLSAGF
GSNSSSGFNFSSPGLNASAGLTFGVSNPPATGFGTGGPLLQLKKPPVGNKRGKR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctttaatttcggatccgggtctattggttccaccaacgctggcggagggttt
tcgtttggagccgctgccagtaccccagttgcagcaggtacaggtgggtttactctgggt
ggagctctgggtgctacagccccagcctccaccaccaccacctcttctctgggcctgggc
gggtcactattctcacaaaaacctactggggggttctcctttaacactcctgcctcaggt
gcccctgcagcctctacagcccctaccacgggcttcagtatgaccttcaataaaccctct
gcctcggcccaacccttctccctcactgcagcctcctcagcccccacaggggcaggactg
acactaggctcagtcctcacctccactgcgccacagcaaggagccacaggattctctctc
aacctagggggtgtggccgcaagtacagccccatccacaggtctatcgctgggttccagt
atgttctctaacatggctactactggtctgagtcagtccactcttggaggactggggttt
gcgttaggtttgggccagaccactctcggatcaggggggttgacgttaggttccctggcc
tctacctccacggcggtgtcagcggcccccagccttggactgggaggagttgacttcagc
acctcctcagagaagaaaagcgacaaatcatcaggggccagcccacaagacagtaaagct
ttgaaagatgaaaatttgcctccagtcatctgtcaggatgtagacaacttccagaagttt
gtgaaggagcagaagcaggttcacgaggagatcagcaggatgtcatctaaagccatgctg
aaggttcaggatgacatcaagagtctcaaacagctgctgtctgtcagcgcttcgggacta
cagagaaacgccctggctatagacaaactgaagatggagactgcgcaggagttgaagaat
gcagacatagctctgcggactcagaagactccccctggactccagcacgacaacacagct
ccctatgattatttccggtgtttagtggaacagtttgaggttcagttgcagcagtacaga
cagcagatagaggaactggagaatcaccttactacacagggcagtggatcacacatcaca
ccacaggatctgtcactggccatgcagaagttgtaccagacgtttgtggctctggctgct
cagctccagtcagtacacgagaacgtcaagaccctgaagcagcagtacctgggataccgc
cgggccttcctggaggactccacggacatcttcgagtccaagcgggtggccagtaagaag
tggcagagtgccccacgcatcaccactggccctgcccccttcagcagcatccccaatgcg
gcggcggtcgccatggcagccacgctgagccagcagcagcagcccggcccagggagccag
gtgtccctggggtctggcttgggaaacccctttgccttgggagtgggctctagcttgggc
acctcaggtctcggagtgtttggtgggggtccaggtttcgggggggtagcgacggggggc
tcctcatttggtttctcctctgccagcaagccctcgggagggagcctgagtgcaggtttt
ggaagcaacagtagttcagggtttaacttcagtagccccggcctcaacgcgtctgcaggc
ctgacgtttggcgtgtccaaccctcccgccacgggcttcggcactggaggtccactgctg
cagctcaagaagcccccggtgggaaacaagaggggcaagagatag
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