Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420348
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Entry
139420348 CDS
T10872
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139420348
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139420348
09142 Cell motility
04820 Cytoskeleton in muscle cells
139420348
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139420348
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139420348
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139420348
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139420348
Hyaluronan
Extracellular matrix or blood plasma proteins
139420348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
Kunitz_BPTI
vWA_SIBA-E
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
139420348
NCBI-ProteinID:
XP_071026451
LinkDB
All DBs
Position
2:complement(7999299..8019354)
Genome browser
AA seq
2726 aa
AA seq
DB search
MEGTQGLLAIFTIAACFLVNGAQKTVCKEEAVADIVFLVDGSWSIGSENFKQIRQFLYTL
VNSFDVAPDQVRIGLVQYSNTPRTEFLLNTFQDKQDILQYITNLRYMGGETNTGLGLDFL
LNELFVDRAGSRVNENVPQIGVVITDGESMDNVGLHALKLKKQGVTLYAIGIKEADEDQL
KEIATTPHNQHVYSVSDFAALQGISQSLIQVLCTTVDEAKRPISKVVQECLNATVADIVF
LVDGSTSISPTNFQEVRRFLHSFIEGLDIGADKVRIGLAQFSNEIQKQFHLGEHTDQKAL
LEQVDRLPQLGGGTATGKAITVLREEFFTKANGSRADQRVPQIAVVLTDGASADNVTLPA
KALRQQGVIVFAIGVGAANINELKDIANRPHERFLVNIESFQALQTLSQGLLQTVCVSME
NQRMALIPKFSDIFFLVDSNMMQADFQLVRTLLMRLVNQLNPSTKTMRLGLAQFAQDTKV
EFLLNTHNTKEEYLAALRKFRLPLRPNRSRHLGDALEYARAHFFTTASGGRNEQGYRQFL
VTVTGGDSKDNVMKVARTIKSEGTTIVSIGLGESTLPELKLMATSPFFYQTTSITSVLKT
VFETEEVVTVTDDCSEASLADIVFIVDESSSNRTANFQLVRGFIHKIVDGLDIDCKRVRV
GIVLYSNKASAQVYLNSFQEKTNILQFIKILPYRRGLTYTGEALEYAREKMFIKERGSRK
EQGVQQVAIVITGKSQDNVTSHAAALRRAGVTVYAVGIKDADENELRQIASDPPNKHVLH
VDSFAKLKTLEKSLKKSVCYNILKKAVKDNARTYTAKQSCLQTDEADMFFLIDHSGSIEY
PDFADMKTFINKFINTFHIGPHHVRVGVVKFSDTPALEFDLTTYPDKPSVEKAVDSIIQL
GGGTKTGLALNSMGPHFDRAKATRSNKVREYLIVITDGESEDNVKDQAAKLRAQGITIYA
IGVNLANDTQLLEIAGSQEKKFFVNNFDALKPIKNDIITDICSPDICNDMKGDVLFLIDS
SGSINNPDFQKMKVFMQSIINKSDIGLDKVHVGIIQFSTSQQVIFPLNKHNDKEGMLQDL
QTMQQIGGGTHTGRALSYTSQFFDPPKGGRTNVKQFLIVVTDGEAQDEVMSPAKKLQDKG
VIIYAIGVVNANNTQLLEISGAQERVYSERDFDALKALDSQLALAICDPERECVRTEIAD
IIFLVDGSTSISSDNFDIMKNFMMSVVNETSVGEKQTRYGLIVFSDNPESKFTLNEYKSK
RDVNSAITKLREPSGDTYTGKALKYSLGYFGAQYGGRKALNVPQWLMVITDGEATDPYSL
AGPAKELRDNGIIVYSIGVVGANKQELELMAGDTNKVFFVDDFHKLDTLHKNISFEFCQT
SKPVCEKTQGDLVLLIDSSGSISTTDFTIMKKFATDLVSSFNIAEQSFRVGVAQFSSDPK
KEFFLNEYYTEAEVNNQINNMMQIRYTTYIGKALNYVRTEYFQPARGSRINAKVSQNLVV
ITDGRSDDDVVDAAEKLKAMNIEVFAIGIGKDHKPVELGQITLNPERVFSVQDFASLDKI
KKKVVDTICSSKVPDTQAGCTIDIAMGFDITRRATAQGLFDGQAQLQAFLPQIIRYVSNL
KGLCCVAGDGSIETNIGFRVVEQDGKVLYDYNFEKYDEKIVEKVMALQTSQTTYFNSFLL
RSFSDKFQKSNAGVKVLVIFSDGLDDDVVKLEQESELLRTKGINALLTVALEGVQNANLL
QMVEFGRGFGYKQPLNIGMHNLGNTLLTQIDTVAERECCNVMCKCTGHEGIRGNRGRPGT
KNQPGLKGHPGFPGEEGGIGERGPPGPTGPQGLQGCSGRRGLKGSRAYRGDRGNDGDHGL
DGVDGEQGLIGTAGAAGERGNPGRPGNSGLIGEPGVKGQRGLRGDPGDSGVDSIVAGPKG
GRGNPGLPGDPGEEGSRAESGIVGNPGPQGRRGLPGPNGTPGDPGVVGLQGIPGPSGPQG
IRGDLGQPGPRGLQGLPGPQGTPGTMGGKGSTGRRGMNGQKGQPGDLGVNGALGTLGPRG
MPGLDGSDGHGPPGPQGMKGEPGFHGYPGLQGESGDFGVKGGPGPKGNRGRGGNSGRSGE
SGDPGSIGPPGHTGSRGRPGERAMSECQLTTYIRDNCACSQGQAACPAYPTELVFALDMS
QDVEPATFERMRSALLSILDDVAITESNCPTGARVAVVSYSANTKYLIRFQDYQRKPELL
EAIQNIALERTSNQRHLGEAMRFVGRHVFKRTRKALTMRKVAVFFTNGPSVDSAAIVTAA
MEFKALNIVPAVIAMRNSPDVQRAFEADDTGSFILVRLVDRSQDQNAVLTRIKNCVICYD
HCKPAQGCDFTDAQRPLVVDMDLTLVVDGSREIRADQYAGVQELLGSVVKQVAWSPKPSV
ADGRARVALLQTSSSLLPQTSQSVKVEFDLQKYHNHIGLQTHLRSMQQQGGVSSLGQTLE
YALSKVFLKATRPRKSRVVLAVVGAETAHWDQAKLAYISQKAKCQGVSLFVIAVGDHYNS
TQVEELASTPSEQHLLHLWHVKEWERGYAQRFFRAFLRVLSKGRNSYPPAHLKLKCELML
GQEHGQGQGQAEWDVWKEEEEYTDEEEFLEHTGVFLTQIALDQVDTIHAFSRGDGATSPP
RPQPNSNDHTTLLRTEESTVLNQDACFFKQDKGGCENYTLKWYFDTTQSECSRFWYGGCG
GNANRFETQEACEGLCLRRNSTHVKP
NT seq
8181 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacacagggcctcctggccatctttaccatagcagcatgttttctggttaac
ggagcacaaaaaacagtctgcaaggaagaggccgtggccgacatcgtcttcctggtggac
ggttcatggagcatcggctcagagaacttcaaacagattcgccagttcttgtacacgctg
gttaacagctttgacgtggcccccgaccaggtgcgcatcggtctggtccagtacagcaac
acaccgcgcactgagttcctcctcaacaccttccaggacaaacaggacatcctgcagtac
attacaaacctgcgttatatgggtggtgaaaccaacacgggcctgggcctggacttcctg
ctgaacgagctctttgttgaccgcgcagggagccgggtgaatgagaacgtgccccagatc
ggcgtggtgatcactgatggtgaatcaatggacaatgtggggctgcatgcccttaagctg
aagaagcagggcgtcacgctgtacgccatcgggatcaaagaagcagacgaagatcagctg
aaggagattgccactacacctcacaaccagcacgtgtacagcgtgtcagactttgctgcg
ctgcaggggatctcccagagcctcatccaggtgctatgtactaccgtagatgaggcaaag
agaccaatatccaaagtggtacaagagtgccttaacgccacagtggctgacattgtgttc
cttgtggatggctccaccagcatcagccctacaaacttccaggaggttcggaggtttctc
cacagcttcatcgaggggctggatattggagcggacaaggttcgcataggactagcccag
ttcagtaatgagatccagaagcaattccatttgggggaacatacggaccaaaaggcccta
ctggagcaagtggacaggcttccacagctcgggggaggcacagccaccggcaaagccatt
actgtccttcgggaagagtttttcaccaaggcaaacggtagccgcgctgatcagagggtg
cctcagattgctgtggtgctcaccgacggggcgtctgcggacaacgtaacgctgccagcc
aaggcgctaaggcagcaaggggtcattgtgtttgctattggagttggggcagccaacatc
aacgagctgaaggatatcgctaacaggccccatgagcgtttcctggtcaacatagaaagt
ttccaggccctacaaacactttctcagggtctgctgcagactgtctgtgtctccatggag
aaccagaggatggctctaatcccaaagttctctgatatcttcttcctggtggacagcaat
atgatgcaggcagacttccagctggtcagaacccttctgatgcgactggtcaaccaactc
aacccgagcactaaaacgatgcgcctgggtctggcccagtttgcccaggacaccaaggtg
gagttcttactgaacacccacaacaccaaggaagagtacttggcagctcttaggaaattc
aggctgccgctgcgtcccaacaggtctcgtcacctgggcgatgccctggaatacgcccgt
gcacacttcttcaccacagcgtctggtggccgtaatgaacaaggctaccggcagtttcta
gtcacggtgacagggggggattcgaaggataacgtgatgaaggtggcacgtactatcaaa
tctgaagggacaaccattgtgtctatcgggttgggtgaatctacacttccagagctaaag
ttaatggccacctcgccattcttttaccagactacatccatcacctctgtgctaaagact
gtctttgagactgaagaggtggtcactgtgactgacgattgcagtgaagcttcactggct
gacattgtgtttatagttgatgagtcttcgagcaatagaactgcaaacttccagctggtt
cgtggattcatccacaagatagtagacggcctagatatagactgcaaaagggtgagggtg
ggcattgtcctctatagcaacaaggcctcggcccaggtctacctcaactccttccaagaa
aaaacaaatatccttcagttcatcaagattctgccctaccgtcgcggtcttacatacact
ggcgaggccctggagtatgccagggagaagatgtttatcaaggagaggggcagccggaaa
gaacagggggtgcagcaggtggcgatagttatcaccggaaagtcccaggacaacgtaact
tctcatgccgctgcactgcgcagagctggtgtcactgtctatgcagtggggatcaaggat
gctgacgagaacgagctgagacagatcgcttcagatccccctaacaagcacgtattgcat
gtggacagctttgccaagctcaagaccctggagaagagcctgaagaagagtgtgtgctac
aacatccttaaaaaagcagtcaaagacaacgcaaggacatacactgccaagcaaagctgt
ttgcagacagatgaagcagacatgttcttcctgatcgaccactcagggagtattgaatat
ccagactttgctgacatgaagacatttattaacaaattcataaacacattccacatcgga
ccgcatcatgtccgcgtgggtgtggtaaagttctctgatacaccagctcttgagtttgat
ttgacaacctaccctgacaaaccttcagtggagaaagcagtggatagtatcatccaactt
ggaggcgggacaaagaccggattagcgctgaactctatgggtccgcactttgatcgggct
aaggccacccgaagtaacaaagttcgcgagtacctcattgtcatcacagacggagagtct
gaagacaacgtgaaggatcaagcagcaaagctgagggcgcagggcatcaccatatatgcc
attggggtgaatctagctaacgatacacagctgctggagattgctggcagccaagagaag
aagttctttgtcaacaactttgacgctctgaaaccaataaaaaatgacatcatcacagat
atctgctcccctgatatttgcaacgacatgaagggggacgtcctcttcttgattgacagc
tcaggtagcattaacaacccagacttccagaagatgaaggtcttcatgcaatccatcatc
aacaaatctgacataggcctggataaagtgcacgtgggcatcatacagttcagcaccagc
caacaggtgatcttccctctcaacaagcataacgataaggaaggcatgttgcaggattta
caaacgatgcaacagataggcgggggcacacacaccggcagagccctgtcctacacctca
cagttctttgacccaccgaaaggagggcgcactaacgtgaagcagttcctgattgtcgta
accgatggtgaggcgcaggatgaggtcatgtctcctgccaagaaacttcaagacaagggt
gtgatcatctacgctattggggtggtcaatgccaacaatacacagttactggagatcagt
ggcgcgcaggagagggtctactccgagagggactttgatgcactcaaggctttggatagc
caactggcattggcaatctgtgatccggagagagagtgtgtgaggacggagatcgcagac
atcattttcttggtggacggctccaccagcatcagctcagataattttgacataatgaaa
aacttcatgatgtccgtggtcaatgaaacctctgttggggagaagcagacacgctatggt
ctgattgtcttttcagacaaccccgagtctaaattcacactcaacgaatacaaatctaag
cgagacgtcaatagtgccatcacaaagcttagagagcccagtggagacacctacactgga
aaggcactcaagtattccttgggttattttggtgcacagtacggcgggcgaaaggcccta
aatgttccccagtggttgatggtgatcacagatggtgaggctactgacccctatagccta
gctgggccagccaaggagctacgggacaatgggatcatagtctatagcatcggagtggtt
ggagcaaataagcaagagcttgagctcatggcaggggacacaaataaggttttctttgtg
gatgacttccataaactagacacactgcacaaaaatatttcctttgaattctgccaaacc
agcaaaccagtctgtgaaaaaacgcagggggatctggtcctgttgattgacagctcaggg
agcatcagcaccaccgacttcactatcatgaagaagtttgccacagaccttgtttccagc
ttcaacattgcagagcagtccttccgggtgggagttgcccagttcagcagtgatcctaaa
aaggagttcttcttgaatgagtattacacagaagcagaggtgaacaaccagataaacaat
atgatgcagattaggtacacaacgtacatcggaaaggccttgaactacgtccgtacagag
tacttccaaccagctagagggagccgtatcaatgccaaggtctctcagaacctggttgtg
atcactgacggacgttcagatgatgatgttgttgatgcagcagagaagctcaaggccatg
aacattgaggtgtttgccatcggtatcgggaaagaccacaaacctgttgagcttgggcaa
atcactctcaacccggaaagggtcttctctgtgcaggactttgccagcctggacaagatc
aagaagaaggtggtggatactatatgctcctccaaggtaccagatactcaggcgggctgc
accatagacatcgccatggggttcgatattacacgcagggccaccgcccaggggctcttc
gatggccaagcccagctacaggccttcctgccacaaatcatccgctatgtgtccaacctg
aagggcctgtgctgcgtggcgggagatggttccattgagactaacattggcttccgcgtg
gtggagcaggacggaaaggttctctacgactacaactttgagaagtacgacgagaaaatt
gtggagaaggttatggccctgcagacctcccagacaacatacttcaactccttcctcctg
cgctccttcagtgataaattccagaaatctaacgctggcgtgaaggtgctggtgatcttc
tcagacggactcgatgatgacgtggtgaaactggagcaagagtcggaacttctccgcact
aaaggtatcaacgccctgcttacagtcgccctagaaggggtccaaaatgccaaccttctt
cagatggtggagtttgggcgaggatttggctacaagcagccgctcaacattggcatgcac
aatttgggaaacaccctgttgacacaaatagacacagtggctgagagggagtgctgcaat
gtgatgtgtaagtgcaccggacatgagggtatccgtggcaacagaggacgcccagggaca
aagaatcagccaggactgaaaggacaccctggcttccctggcgaggaggggggaattggc
gagagaggtccaccaggtcccactggcccacagggactacagggctgttccgggaggaga
ggcctcaagggctcaagagcctacagaggggacaggggtaatgatggagaccatggcctt
gatggggttgacggtgaacagggtctgattggaacagctggagctgcaggagagagagga
aacccaggaagaccaggcaacagcggcctcataggagagccaggagtgaaggggcagcgt
ggacttagaggtgaccctggagactctggagtggacagcattgtcgcgggtcccaaagga
ggaaggggaaacccaggactaccgggagacccaggagaagagggcagtcgagcagaaagt
ggaatcgttggaaacccaggtcctcaaggaagaagaggtctccctggtccaaatggaaca
ccaggggatccaggagttgtaggcctacaaggaattcctggcccttctggaccacagggt
ataagaggagacttgggccagcctggacccaggggcctgcagggtttacctggacctcag
ggcacacctggaactatgggtggcaaaggttcaacaggaagacgagggatgaatggacag
aagggccaacctggggacctcggagtcaacggagcccttggaacacttgggccaagaggg
atgccgggtcttgatggcagtgacggccatgggcctcccggaccccagggaatgaaggga
gagcctggtttccatggttaccctggattacagggtgaaagtggtgattttggagtcaaa
ggaggtccaggccccaaaggaaaccgaggcagaggggggaactcgggcagatcgggtgag
tcaggagatcccggatccattggaccaccgggacatactggctctagaggcagaccagga
gagagagccatgtctgaatgccagctgaccacctatatccgtgataactgtgcatgctct
caaggccaggcagcgtgcccagcctaccccacagagctggtatttgctctggatatgtca
caggatgtggagcctgccacatttgagaggatgcgctccgctctcctctccatattggat
gacgttgccatcaccgagagcaactgtccgacgggtgcacgtgttgccgtggtatcctat
agtgccaacaccaagtacctgatccgattccaggactaccaacgcaagccggagttgttg
gaggccatccaaaacattgcactggaacgaacgtccaaccagcgccatcttggggaggcc
atgcgctttgtggggcgccatgtcttcaagcgaacccgtaaagcattgacgatgaggaag
gtggcagtgttcttcaccaacgggccctctgtggacagcgctgccatcgtcacggccgcc
atggagttcaaggccctgaacatcgttcctgctgtcatcgccatgaggaactcccccgat
gttcaacgggcttttgaggctgatgacacgggcagcttcatccttgttcggctggtggat
aggtcacaggaccaaaatgctgtgctgacaagaatcaaaaattgcgtcatctgctacgac
cactgtaaaccagcccaggggtgtgattttactgacgctcagcggcccctggtggtggat
atggacctgaccctggttgtggacggttcaagggagatccgggccgatcagtacgctggc
gtccaggagcttctgggctcagtggtgaagcaggtagcctggagccccaaacccagcgtg
gctgacggtcgggccagagtggcccttctccagaccagtagttctctgctcccccagact
tcccagtccgtcaaggtagagtttgacctgcagaagtaccacaaccacattggtctacag
acacacctgaggagcatgcagcagcagggaggagtgtcgtctctggggcagaccctggag
tacgctctgagcaaggtgttcctcaaggccaccaggcccaggaagagtagagtggtgctg
gctgtggtgggggccgagacagcccactgggaccaggccaagctggcctacatttcccag
aaggccaagtgtcagggcgtttccctgtttgtgatcgcggtgggcgaccattacaacagc
acccaggtggaggagttggcgagcacgccgtcagagcagcacctgctccatctgtggcat
gtgaaggagtgggagagaggctacgcacagcgcttcttcagagctttcctcagggtcctc
agtaagggaaggaacagctaccctcctgcccatctcaaactcaagtgtgagctgatgctg
ggacaggaacacggacagggacaaggacaggcagagtgggatgtgtggaaagaggaagag
gagtacactgatgaggaggagttcctggagcacactggtgtatttctgactcagattgct
cttgatcaggttgacactatacatgccttctccaggggagatggagccacttcacccccc
cggccacagccaaactctaatgatcacacaaccctcctgaggacagaggaaagtacagtt
cttaaccaggatgcatgtttcttcaaacaggacaagggaggttgtgagaactacactctg
aagtggtactttgacacgacacagagcgagtgctcccgtttctggtatggcggctgtggc
ggcaacgctaaccgtttcgagacgcaggaggcttgtgaaggcctctgtctgaggaggaac
tccacacatgtaaaaccctga
DBGET
integrated database retrieval system
