Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420349
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Entry
139420349 CDS
T10872
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139420349
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
139420349
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
139420349
NCBI-ProteinID:
XP_071026448
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Position
11:21190280..21236068
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AA seq
805 aa
AA seq
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MVKWSLAPSSGMHISVLPYSFSVAMAALYQVTDVSSPDKFLALKDVREVKEETTLDEKLF
LLACEKGDYYMVKRLLEEKTELNINCVDVLGRDAVTISIENQNLDILKLLLEHGCQATDA
LLVAIDSEVVGAVDILLNHHPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYE
ILTMLLKQDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDP
ILRAFELSADLRELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHMANED
TVDKRGLMEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMST
VLSVAVLWPLLSLCYLVVPRSRVGHIIHTPFVKFIIHSASYFTFLLLINLYSLVYNEGKK
NTMGPALEMIDYLLILWIIGMVWSDVKRLWYEGLEDFLDESRNQLSFVMNSLYLSTFALK
IVAHSKFKNVEDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISVG
QMLQEFGKFLGLFLLVLISFTIGLTQLYGKDQKDPAKSPAKDCEGIFCQQQSNDAFHTFM
GTCYALFWYIFSLAHVALFVTRINYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKS
FRQIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLLTSMSKWICSHTST
GKVKRQNSLKEWRNLKRKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDL
SKFRNEMRDLLGFRTSKYAMFYPRS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggttaaatggtcgctggcgcctagtagtgggatgcacatcagtgtcctgccctactcc
ttctccgtcgcaatggccgctctatatcaggtcacggacgtgtcctctccggataaattt
ctggccctgaaagacgtgagggaggtgaaggaggagactactctggatgaaaagctcttc
ctactggcctgtgagaaaggtgactactacatggtgaagagactgctggaggagaagaca
gagctcaatatcaactgtgtagacgtgctggggagagacgctgtcaccatctctatagag
aaccaaaacctggacatccttaagcttctgctggagcacggctgccaggcaacagatgct
ctgttagtggccattgactcggaggtggtgggagctgtggacatcctcctcaaccatcac
cccaggaggtcgtctaagccctccatcgctaaactgatgcagcgcatccagaacccagag
tactccactaccatggacgtggctccagtgatcctggcggcccataggaacaactatgag
atactgaccatgttgctgaagcaggatatctccctgcccaggcctcacgctgtgggctgc
gagtgtactctctgtaatgccaagaacaagaaggacagcctacggcactccaggtttcgt
ctggacatctacaggtgcctggccagcccgtctttgattatgctgactgaggaggacccc
atcctcagggcctttgagctgagtgcagacctcagggagctcagcctggtcgaggtggag
ttcaggaatgactatgaggagctggctaagcagtgtaagatgtttgctaaggatctcctg
gcccaggcacgtaactccagagaactggaggtgatcctcaaccacatggccaatgaagac
acagtggacaagagaggcctgatggaggaacgcatgaacctcagccgactcaaactagct
atcaagtacaaccagaaagagtttgtggcccagtccaactgccagcagttcctcaacacc
gtctggttcggcgagacggccagctaccggcgtaaacacacgtgtctgaagatgtccacg
gtactgagcgtggcggtgctgtggccgctgctctccctgtgctacctggtggtgccgcgc
tcccgcgtgggccatatcatccacacgcccttcgtcaagttcatcatacacagtgcctcc
tacttcaccttcctcctgctcatcaacctgtactctctggtgtacaacgagggcaagaag
aacaccatgggccctgccctggagatgatcgactacctgctcatactctggatcataggg
atggtgtggtcggacgtgaagcgtctatggtacgagggcttggaggacttcctggatgag
tcgaggaatcagctgagcttcgtcatgaactctctctacctgtccaccttcgccctcaag
atagtggctcacagcaagtttaagaacgtggaggacacagagaggaaaaattgggatgcc
ttccaccccatccttgtggctgaggggctgtttgccttcgctaacgtcctgagctaccta
cgactgttcttcatgtacaccaccagctcaatactgggcccactgcagatctccgttggc
cagatgctgcaggagtttggtaagttcctgggtctgtttctgctggtgctcatctctttc
accatcggcctgacgcagctctacgggaaggatcagaaggacccggccaagagtcccgcc
aaagactgtgagggcatcttctgtcagcagcagagcaacgacgccttccacacgttcatg
ggaacgtgctacgcactgttctggtacatcttctctctggcccacgtggctctctttgtg
acccggatcaactacacggaggagctgaggtcatttgtgggagccctcatcgtgggcacg
tacaatatcgtggtggtcatcgttctcaccaagctgctggtcgccatgctccacaagagc
ttcaggcagatcgctaaccacgaggataaggagtggaagtttgcccgcgccaagctgtgg
ctgagctactttgacgacaagtgtactctgcctccgcccttcaacatcctaccctccccc
aagactgtgtgttaccttctgaccagtatgagtaaatggatctgctcccacacctccacg
gggaaggtcaagagacagaacagcctcaaggagtggaggaacctgaagcggaagcgtgat
gagaactaccagaagatcatgtgttgtcttgtccatcgctacctgacgtccaccaggcag
aagatgcagagcaccgaccaggccaccgtagagaacctcaacgacctgcggcaggacctc
tccaagttccgcaacgagatgagagacctgctgggattcagaacctccaagtatgccatg
ttctacccccggagctaa
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