Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420366
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Entry
139420366 CDS
T10872
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4-like
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139420366
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139420366
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
139420366
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Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
ACT_13
AAA_22
AAA_23
AAA_15
Motif
Other DBs
NCBI-GeneID:
139420366
NCBI-ProteinID:
XP_071026492
LinkDB
All DBs
Position
11:complement(22114467..22166114)
Genome browser
AA seq
2345 aa
AA seq
DB search
MGTDSQVRLLLWKNWTLRKRQKMRFFMEIMWPVVLFIGLVWLRTANPLYRQHECHFPNKA
MPSTGILPWIQGIFCNANNPCFQYTTRGEGPGLVSNYNDSILARFYLDAQELLLSDPEFL
QLGRLWRELFTMSTFMDTLRTSPEQVSGRGLKVEDILKDDETLTSFLLRDVPLSEFVVNE
LVNAKIRPEQFVFGVPDLHLKDIACSQTLLEQFIIFPSRRGLYRVHSSICALTPQRLQTI
EDRLYANVDFFKLFRQLPRVLDNHSSGVDLHFWARVLSATYEKLRELSERNSSKALLEVM
SPLLQSQVGSPPSFRQLMGDVSSLACGYMEGGFSRVASFNWYEDNNYKAFMGINDSTRGG
QGQYTYDHTATPFCNDLMKELESNPITRIMWSSVKPMMMGKILYAPDSPAVRKIIRNANT
TFEELERLRTMGRAWEEVGPQVWAFFQDSVQMNMIRDTIRNPTVRDYIDRSLQDTEFSSK
HILNFLYNGPIEDRDYDMANFDWRNVFNFTDQVIRMMNQYGECLILDKFSGLNDEEQMTH
RALSLMGESKFWAGLVFMDTYPWTTKVPPHVRFKIRMDIDSVERTNKIKDRYWDPGPRAD
PVDDLRYVWGGFAYLQDMIEHGIIRTQTGKDWPLGVYLQQMPYPCYVDDLFMLTLNRCFP
IFMVLAWVYSVSMTVKSIVLEKELRLKETLKTMGVTNGVLWVTWFIDSFLMMAASTSLLT
VIIMGGKVLNYSNPLILFLFLLTFTTATIMQCFLLSVFFNKANLAAACSGIIYFTLYLPH
ILCFAWQDRITKDDKIMASLMSQVAFGFGTEYLSRYEEQGLGLQWDNIQTSPLEGDEYSF
LTSISMMALDTVLYAVLAWYLDNVFPGQYGIGRPFYFPILPSYWLNSRPPKPKELEKPRF
DNLVNQAEEKQKTNHEPGDEQKTKAPDEELPSCKHQDKRERLGKGKTEEEEEEEEENKKN
QEEKQNGEKEGQQGQAYFEGEPAGLVEGVCVQNLVKVFGRGQKPAVDGLSITFYESQITA
FLGHNGAGKTTTLSILTGMFPPTSGTASIYGKDIRTDMDTIRHSLGMCPQHNILFHHMTV
EEHILFYSLLKGRSLSEAQLEVENMLEDLGLPHKRDEEAQNLSGGMQRKLSVAMAFVGGA
KVVILDEPTSGVDPYSRRSIWDLLLKYRSGRTVILSTHHMDEADLLSDRVAIISQGRLHC
CGSPLFLKNCFGAGFYLTLVRRMKYEGPRTKMKCDCTDECSCKCSTCTTYKEESPQAKAP
DRQMDGDLSSITGLVHHHVPEARLIEAIGQELTYLLPNQGFQPRAYASLFRELEETLSDI
GLSSFGVSDTSLEEIFLKVTADSEVKSGKTTQDQRLWQQTPRPSVGHNKVALYVDQSEEA
DGETQANRQGNSGGSEGSEGRGSRQVKGVCLVLKQLFALLIKRFHHAIRSHKDFFAQIVL
PASFVFVSLMFTTIVPPFGEYPSLTLSPWMYGRQFTFFSNERILDPEMRYFGEVLLNKPG
FGTRCMVDEPLEDFPCNNITTEWEMPLLNPALIDMLDGPEWTAVNPSPGCQCSTPRKLTM
LPVCPEGAGGITPPQRIQSTGDVLVDLTGRNISDYLVKTYPSLIKASLKSKYWVNEQRYG
GISVGGQLPVLDVDPKTIQDAASQLGRLLNVTGGKYSKQTLKDIGTFLRYMESEYNVKVW
YNNKGWHAMVAFMNVANNAILRANLPKDASLDVYGITTINHPLNLTKEQLSEVTVLSTSV
DAMVAICVVFAMSFVPASFVLYLIQERVTQAKHLQFVSGVSPVIYWMANFLWDMVNYSIS
AALVVAIFMVFDKKCYTSPTNLQPLTALLMLYGWSVTPMMYPMSYIFSIPSTAYVSLSCI
NLFIGINSSAITFILDLFDSTAALYKCNQLLKKMLLIFPHYCLGRGLIDMAMNQAVTDVY
ARFGEDFSLDPYSWDFLGKNLVFMAVEGFVYFIMNILIQYRFFLDHWITDCKTDPIVEED
VDVAQERERIYNGGSKNDILKIRDLTKTYMGKTKPAVDRICVGVSPGECFGLLGVNGAGK
TTTFKMLTGDTDVSSGEASVTGHSILTNILDVHQNMGYCPQFDAIDDLLTGREHLHLYAR
LRGVPESEISKVADWAIQKLGLADYAGHTAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT
TGMDPHSRRFLWNSIMSVIQDGRAVVLTSHSMEECEALCTRLAIMVNGTFQCLGTIQHLK
YKFGDGYVVTMKIQASTPGCPPDLNPAEAFMESTFPGCVQREKHYNTLQYEIASSSLARI
FQLVLANKDRLNIEDYTVSQTTLDQVFVNFAKQQSGEDDGMVLHPRAAGARRKEMKVTPL
SCLGK
NT seq
7038 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggacagtcaagtccgattgctgctgtggaagaactggacccttcgcaagaga
cagaagatgcggttcttcatggagattatgtggccagtggttctgttcattggactagtg
tggctgaggacagctaaccctttataccgtcaacatgagtgtcactttcccaacaaggcc
atgccctcgactggcatccttccatggatccaaggaatcttctgcaatgccaacaaccca
tgcttccagtacaccaccaggggagagggccccgggctcgtctccaactacaacgattcc
atactggctcggttctacttggacgcccaggagcttcttctgagtgacccagagttcctg
cagctgggtcggctctggagggaactgttcaccatgagcaccttcatggacaccctgcgg
accagcccagaacaggtctcaggtcgagggctgaaggtagaggacattctgaaggatgat
gagaccctgacgtcctttctcctaagggatgttcctctgtcagagtttgtggtcaatgag
ctggtcaatgccaagatcaggcctgagcagtttgtgtttggcgtccctgacctccacctg
aaggacattgcctgcagtcagaccctgctggagcagttcatcatcttccccagccgcagg
gggctgtacagggtgcacagcagcatttgtgccctcacaccacagagactacagaccata
gaggacaggctctacgccaacgtggacttctttaaactcttccgtcagcttccccgggtg
ttggataaccactccagtggtgtcgacctacacttctgggccagagtactctctgccacc
tacgaaaagctgcgagagttgtcagagaggaacagctccaaagcgctgttggaggtgatg
tcccccctgctccagtcccaggtgggctctcccccatctttcagacagctgatgggggat
gtgtccagcctggcgtgtggctacatggaggggggcttctctcgggtggcctccttcaac
tggtatgaggacaacaactacaaggccttcatggggatcaacgatagcacccggggagga
cagggacagtacacctacgaccataccgccactccgttctgtaatgatctgatgaaggag
ctagagtccaatcccatcaccaggatcatgtggagctctgtcaagcccatgatgatgggg
aagatcctctacgcacccgactccccagccgtcagaaagatcatcagaaacgccaacacc
acatttgaggagctggagaggctgaggaccatgggtcgggcctgggaggaggtgggccct
caggtctgggccttcttccaggacagcgttcagatgaacatgatcagggataccatacgg
aatcccacggtgagggactacattgacaggagtctacaggacacagagttctcctcaaaa
cacatcctcaacttcctgtacaacgggccaatagaagacagggactacgacatggccaac
tttgattggaggaatgtcttcaacttcacagaccaagtcatccgtatgatgaaccagtat
ggagagtgtctgatactggataagttctctgggctgaatgatgaggagcagatgacccac
agagctctgagtctgatgggggagagtaagttctgggctggcctggtcttcatggacacc
tacccctggaccaccaaggttccaccccacgtccggttcaagatccgcatggacatcgac
tcagtggagcgcaccaataagatcaaggacagatactgggaccctggtcctagggccgat
cctgtggatgatctccgttacgtgtggggggggtttgcctatctgcaggacatgatagag
catggcatcatcaggacccagacaggcaaggactggcccctcggtgtctacctacaacag
atgccgtacccatgctacgtggacgacctcttcatgctgacattgaaccgttgcttcccc
atcttcatggtgctggcgtgggtctactcagtgtctatgactgtgaagagcatcgtcttg
gagaaggagctcaggctcaaagagaccctgaagaccatgggggtcaccaatggggttctg
tgggtcacatggttcatagacagcttcctcatgatggctgccagcacttccctgctcacg
gtgatcattatgggtggtaaggtgttgaactacagcaaccctctgatcctgttcctgttt
ctgctaaccttcaccacggccaccatcatgcagtgtttcctactcagtgtcttctttaac
aaggccaacctggctgcagcctgcagcggtatcatctacttcaccctctacctgccccac
atcctctgctttgcatggcaggaccgcatcaccaaggatgacaagatcatggcgagcctg
atgtcccaggtggcgtttggctttgggacagagtacttgtcccgttatgaagagcagggt
ctgggtctgcagtgggacaacatccagaccagccctctggagggggatgagtactccttc
ctcacctccatctctatgatggccctggatactgtactctacgccgtccttgcctggtac
ctcgacaacgtcttcccagggcagtatggaattggtcggccattttatttccccatcctg
ccctcctattggctcaactccagacccccaaagccaaaagagttggagaaacccaggttt
gacaacctagtaaaccaggctgaagagaagcagaagaccaatcatgaaccaggtgacgag
cagaagactaaggcaccagatgaggagctgccatcctgcaaacaccaggacaaacgagag
aggctggggaaggggaaaacagaggaggaggaggaggaggaggaggagaacaagaagaac
caggaggaaaaacaaaatggagaaaaagagggtcagcaaggccaagcctactttgagggg
gaaccggcaggactggtggagggtgtgtgtgttcagaacctggtcaaggtgtttggtagg
ggacaaaaacctgcggtagacggactgagcatcaccttctatgagagccagatcactgct
ttcctggggcataatggagctgggaagaccaccaccttgtctatcctgacggggatgttc
cctcccacctctgggacagcctccatctatgggaaggacatccggacagacatggacacc
atcaggcactctctgggcatgtgtccccaacacaacatcctctttcaccatatgaccgta
gaagaacacatcctgttctacagcctgctgaaggggaggtctctgtctgaggctcagctg
gaggtagagaacatgctggaggatctgggcctgccccacaagagagacgaggaggcacag
aacctctcaggcggcatgcaaaggaagttgtctgttgctatggcgtttgtgggcggtgcc
aaggtcgtgatcctggacgagcccacatcgggggtggacccctactccagacgatctatc
tgggacctactactcaagtaccgatcaggacgtacagtgattctgtccactcaccacatg
gatgaggctgacctgttgagtgaccgtgtggccatcatctctcagggtcgtcttcactgc
tgcggctccccgctcttcctcaagaactgcttcggtgccgggttctacctcaccctggtt
cgacgaatgaaatacgagggacccaggaccaagatgaagtgtgactgtactgatgagtgt
tcgtgtaaatgctccacctgtaccacctacaaagaagagtcacctcaagccaaagccccg
gacagacagatggacggtgacttgtcaagcatcacagggctggtccaccaccatgtccca
gaggcccgtttgatcgaggctatcggtcaggagttgacctacctgctgcccaaccagggc
ttccagcccagggcctacgcctccctcttcagagagctggaggaaaccctctctgacatc
ggcctcagcagcttcggggtctccgacacatcactggaggagatattcctgaaagtgaca
gcggacagtgaagtcaaatctggcaaaactacacaagaccagagattgtggcagcagaca
cctcgacccagtgtaggacacaacaaagtagcactttatgtcgaccaatctgaagaggca
gacggggagacccaggccaacaggcaggggaattctgggggctcggagggcagcgagggg
cggggctctagacaggtcaaaggtgtctgtctggtcctgaaacagttatttgccctgctc
atcaaacggtttcaccacgccataagatcacataaggacttctttgctcagatagttttg
cccgccagttttgtgttcgtatcactgatgttcactacgatcgtacctccgtttggagag
taccccagcctgacccttagtccctggatgtatggacgacagttcaccttcttcagtaac
gagcgtatcctggaccctgagatgaggtactttggagaggtgctgctgaacaagcctggc
tttgggactcgctgcatggtggatgaacctctggaggatttcccatgtaataacatcaca
acggagtgggagatgccgctactgaaccctgctctgatagacatgttggatggaccagag
tggaccgcagttaacccttccccaggctgccagtgtagtacccctaggaaactcaccatg
ctgcctgtctgccctgagggagcaggggggataacaccaccacagaggatccagtcgaca
ggtgatgttctggtggacctaacaggcaggaatatctctgattacctggtgaagacttac
ccctccctcatcaaggccagtttgaagagcaaatactgggtgaatgaacaaaggtatgga
ggtatatctgtcgggggacagcttcctgtgttagatgtggaccctaagaccatccaggac
gcagcgtcacagctgggacgactgctcaatgttactgggggtaaatactccaaacaaact
ctgaaggacataggaaccttcctccgctacatggagagtgaatacaatgtcaaggtgtgg
tacaacaacaagggctggcatgccatggtggccttcatgaacgtggccaacaacgccatc
ctcagagccaacctgcccaaagatgccagcctggatgtatacggcatcaccactatcaac
caccctctcaaccttaccaaggaacaattgtctgaagtcactgttctgagcacctcagtg
gatgcgatggtggctatctgtgttgtcttcgccatgtcctttgtcccagcctcctttgtg
ctctacctcatccaggagagggtgacccaggccaaacacctccagttcgtcagcggggtc
agtcccgtcatctactggatggccaacttcctttgggacatggtgaattactctatcagt
gcagcactggtggtggctattttcatggtctttgacaagaagtgctacacgtcgccaacc
aacctccaacccctgacagccctgctcatgctctatgggtggtctgtgacgcccatgatg
taccccatgtcctacatcttcagtattcccagcacagcctacgtctctctgtcctgcatc
aacctgttcattggcatcaacagcagtgccatcaccttcatccttgacctgtttgacagc
acagcggcgctgtataagtgtaaccagctgctgaagaaaatgctgctgatcttcccccac
tattgtcttggccggggtctgatcgacatggctatgaatcaggctgttactgacgtctat
gcccgctttggcgaggacttcagtctggacccctacagttgggactttttagggaagaac
ctggtcttcatggctgttgagggctttgtctatttcatcatgaacatcctgatccagtac
cgcttcttcctggatcactggatcacagattgtaagacggatcccatcgtggaggaagac
gtggatgtggcccaggagagagaacgcatctataatgggggaagcaagaatgacatctta
aagattagagatctcaccaagacatacatggggaagacaaagccagctgtggacaggatc
tgtgtgggagtgtcacctggggagtgctttgggctcctgggtgtgaacggagcagggaag
accaccacctttaaaatgctgaccggagatactgatgtcagctcaggagaagcctctgtc
actggtcacagcatccttaccaatatcctggacgtgcaccagaacatgggctactgcccc
cagtttgatgccatagatgatctgctgactggcagagagcacctccatctgtatgcccgc
ctcagaggggtgcctgagtccgagatcagcaaggtggcagactgggcaattcagaagctg
ggtctggctgactatgctggccacacagccgggacctacagcggcggcaacaagagaaaa
ctatccacagccattgccttgatcggctgtcctccactggtcctgctggacgagcccacg
acaggcatggacccccactcacgtcgtttcctgtggaactccataatgagtgtaatccaa
gatggccgagcagtggtcctcacctcacacagtatggaggagtgtgaggctctgtgtacc
cgtctggctattatggtcaatggcaccttccagtgtcttggtaccatccagcacctcaaa
tacaagtttggtgatggttacgtggtcaccatgaagatccaggcttccacaccaggttgt
cccccagacctgaacccagccgaggccttcatggagagcaccttccctggctgtgtccag
agggagaaacactacaacactctgcagtatgaaatcgcctcttcctccctggctaggatc
ttccagctggtcctggccaacaaggaccgcctcaatatagaggactacaccgtctcccag
acgacactagatcaggtgtttgtgaactttgccaagcagcagtcaggagaggacgacggc
atggtgctgcacccgagggccgctggggcacggagaaaagaaatgaaggtcacaccccta
agttgtctggggaaatga
DBGET
integrated database retrieval system
