Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420584
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Entry
139420584 CDS
T10872
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139420584
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
139420584
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
DUF3447
DBB
Motif
Other DBs
NCBI-GeneID:
139420584
NCBI-ProteinID:
XP_071026871
LinkDB
All DBs
Position
11:4319050..4386789
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AA seq
1131 aa
AA seq
DB search
MQLTKEVAPQNGSYKCVIDDDERRSHQLSVKTDITLESVNLFEWARGGDVSQLEGLVRRN
PGVLREQDDSGASLVHHAAGAGNTPVIRLICSITVRDGWKVYDDEGSMPLHWAVERNQPD
SCRALLELGAEPNVLNKALMSPLHLAVSHTHNHLVQLLLSHYKTESNLEGGLGNTPVMLA
CSINNAEALSILLSHGARLSSQNKLGQYAIHAAAFAGSKKAMDVILKAGEEMGHSIEEHI
NFLDKSYSSPLHLAVRGGNMDIIEFCIHKGAKIDQQQVDRSTALHFACSQGATEAVKLML
SSYSRLDSIINLPDGACQTPLHRATIFDHTELAEYLISKGADIDYIDSKGLSPLLLATNC
GAWRTVALLLSKGANVNIKDQSGCNFLHLAILQPKGLKNLSGDVLQHSSVKDLLSNEDNE
GCTPLHYACRLGIHESVKNILVLQVSLDRKSKDKKSALHFAAQYGRVNTCQRLLETITDS
RLLNEGDERGLTPLHLASAGGHTKVVELLLRKGALFHCDYKGRTCLHHAAAEGYTQTMKI
VLATNIKLLDKLDEDGSTALHLAAREDHVAAVRLLLQRGAEISLNKNHASFFHEALQHGR
KDVINAIIDSDRCTHILSMFKRDAGRRCPVLDLVDMLPESCKYLLDRCIRESDDDTRSPD
YHIDYNFQWLQAPIALTKHAKVDKGLKIQPLATLNAMVKYNRIELLSHPVCKKYLEMKWV
AYGSAAHLLNLFVYLLGLLPLTHLIVSLRPSLDYTGPDNTTAVTMVPISFREQGSFLSGC
MVMVLVMNIYSMGKEVTQMYHQVDLHYFKDPFNYQDWTVAIFSLLFVIPLNFNVEGSWYW
QAGAMAVFQSWISFLFYLQRFEHFGIYVVMFNEIAKTLWKILLLFFFLMLAFALVFHALM
LNQKEFERLDLSGVQIFVMMVGELNYQSNILDIYLDNKLPFPFLTFYMFVVFVILMPILL
MNMMIGLAVGDIAEVKRTAGLKRIAMQIELHTNLEEKMPYWLLKRVDQSFFTIYPNRKCS
KVDSMRASILNFWSQGEANEVQTRLMTNSSNSTSVESELRRQKYRLKEISSVLEKQHDLM
KLMIQKMEITSEADEHDGPTEVKGYRQRSNWGQAKGSNWIPLMKVLERKHV
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaccaaggaagtggcacctcagaacggttcctataagtgcgtgatcgacgat
gacgaaagaagatctcaccaactctctgtaaaaacagacatcactctggagtccgtaaac
ctgtttgagtgggctcggggaggtgatgtgtcccagctggagggcttggtgaggaggaac
ccaggagtactgagggaacaggatgactctggtgcctctctggtccaccacgctgctggt
gcaggaaacacccctgttatcaggttaatctgcagcatcacagtcagagatgggtggaag
gtgtatgatgacgaggggtctatgccgctgcactgggccgtggagaggaaccagccagac
agctgcagggctctgttagagctgggggctgaacctaacgtcctcaacaaggccctgatg
tcacctctacacctggctgttagccacacacacaaccatctggtccagctcctgttgtct
cactataagacagagtctaacctagaaggaggtcttggcaacactccagtcatgttagcc
tgctccatcaataatgctgaggcgctctctatactgctgagccatggggcgcggctctcc
agtcagaacaaactgggccagtatgctatccatgcagctgccttcgcaggctcaaagaaa
gccatggatgtcatcctcaaggctggagaggagatgggtcattccatagaggaacacatt
aatttcctggataagtcatacagtagtccacttcatctggcggtcaggggaggcaacatg
gacatcatcgagttctgcatccacaaaggagccaagatcgaccaacaacaggtggaccgg
tccacagctctacattttgcctgttcccagggagctacagaggcagttaaactgatgctg
tcctcctacagcagactggacagcatcattaacctgcctgatggagcctgccagacacct
ctacacagggcaactatatttgatcacacagaattggcggagtacctcatttcaaagggt
gcagacattgactacattgacagtaagggtctttcccccttgctgctggccactaactgt
ggagcctggagaactgtggctcttctgctgtccaaaggtgccaacgtgaacataaaggac
caatcaggatgtaacttcctccacctggccatcctgcaacccaaaggcctcaaaaatctc
tccggggacgtcttgcagcacagcagtgtgaaggatctgttgagtaacgaggacaacgag
ggctgtactcctctccactacgcctgcagactgggcatccacgaatcggtcaagaacatc
ctggttctacaggtctctctggaccgcaagtccaaggacaagaagtcagccctgcacttc
gctgcccagtatggtcgtgtcaacacctgccagcgtctactggagaccatcacagactcc
cgtctgctgaacgagggggacgagagaggcctgacccccctacacctggcctctgctggg
ggacacaccaaggtggtggagctgctgcttcgtaaaggagccctgtttcactgtgattac
aaagggaggacctgtttacaccatgcagcggcagaggggtacacccagaccatgaagatc
gtcctggccaccaacatcaaactactggacaagctggatgaggatgggagcactgcgctg
cacttggcagcccgggaggaccacgtagcagcggtgagactgcttctccagagaggggcg
gagatcagcctcaacaagaaccacgcctccttcttccacgaagcactgcaacatgggagg
aaggatgtgattaacgccatcatcgacagtgacagatgtactcacatcctgagtatgttc
aaacgtgatgctggccgtcgttgtccagtgttggacctggttgacatgctgccagagtct
tgcaagtaccttctggatcgctgcattagagaatcagacgacgataccagaagtcctgac
taccatatcgactacaatttccagtggcttcaggctccaatagcactgacgaagcatgca
aaggtagacaaaggcctgaagatccagcctctggccactctgaatgccatggtgaaatac
aaccgcatagagctcctctcacaccccgtctgcaagaaatacctggagatgaagtgggtg
gcctacgggagcgctgcccaccttctgaacctgttcgtgtacctgctgggtctgcttcct
ctcacccaccttatagtgagcctgagacccagcctggactacaccggccctgacaacacc
acagctgtcaccatggtgcccatttccttcagagagcaaggttccttcctgtccggctgc
atggtgatggtgctggtgatgaacatttattccatggggaaggaagtgacgcagatgtac
caccaggtagaccttcattacttcaaggatccctttaactatcaggactggaccgtggcc
atcttctctcttctcttcgtcatccccctgaatttcaacgttgaggggtcttggtactgg
caggctggggcgatggcagtctttcaatcctggattagcttcctcttctatctgcaaagg
tttgagcactttgggatttacgtggtgatgtttaacgagattgcgaagacattgtggaaa
atcctactgcttttcttctttctgatgctggcgtttgccttggtgttccatgccctcatg
ctcaatcagaaagagtttgagcgactggacctttctggggtccagatctttgtgatgatg
gttggagaactgaattaccaaagcaacattctggacatatacctagacaacaaacttcca
tttcccttcctcactttctatatgtttgtggtgtttgtcatcctcatgccgatcctgctg
atgaacatgatgatcggtttggcagtcggagacatcgctgaggtaaagagaaccgcaggt
ctgaagagaatagccatgcagatcgagctccacaccaatctggaggaaaagatgccgtac
tggttgttgaagagagtggaccagtcattcttcaccatctaccccaaccgcaagtgctcc
aaggtggactccatgagggcctcaatacttaatttctggagtcaaggagaagcaaacgaa
gtgcagactcgtctaatgaccaactcatcaaattcaacctctgtcgagtctgaactacgc
agacagaagtacagactgaaggagatatccagtgtgctggagaagcagcacgacctgatg
aagctgatgatccagaagatggagatcacatcggaggcagacgaacatgacgggcccaca
gaggtcaaaggttacaggcagaggtcaaactggggccaagccaagggctccaactggatc
ccgctgatgaaggtcctcgagcgcaagcacgtttga
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