Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420593
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Entry
139420593 CDS
T10872
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139420593
09123 Folding, sorting and degradation
03018 RNA degradation
139420593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139420593
03041 Spliceosome [BR:
ocla03041
]
139420593
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139420593
mRNA degradation factors
5'-3' decay
Lsm complex
139420593
Spliceosome [BR:
ocla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
139420593
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
139420593
NCBI-ProteinID:
XP_071026882
LinkDB
All DBs
Position
11:complement(5972465..5976253)
Genome browser
AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcagccactccagctacaaatccgtcacagttgctcccacttgagctcgtggacaaa
tgtataggttcccgaatccatatcgtcatgaagaacgacaaagaaattgttggcaccctg
ttgggtttcgacgattttgtcaacatggtactagaggacgtgacagaatttgaaatcaca
ccggagggaaggaggatcaccaaactggatcagatactgctcaacggcaacaacatcacc
atgctcatacctggaggtgaagggcccgaagtatga
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integrated database retrieval system
