Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420595
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Entry
139420595 CDS
T10872
Name
(RefSeq) ATP-dependent translocase ABCB1-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139420595
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139420595
04147 Exosome [BR:
ocla04147
]
139420595
04090 CD molecules [BR:
ocla04090
]
139420595
Enzymes [BR:
ocla01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
139420595
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
139420595
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139420595
CD molecules [BR:
ocla04090
]
Proteins
139420595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
Rad17
Zeta_toxin
AAA_16
RsgA_GTPase
AAA_5
G-alpha
AAA_28
AAA_30
AAA_29
AAA_7
NTPase_1
PRK
Abhydrolase_2
Motif
Other DBs
NCBI-GeneID:
139420595
NCBI-ProteinID:
XP_071026889
LinkDB
All DBs
Position
2:complement(8824654..8854926)
Genome browser
AA seq
1279 aa
AA seq
DB search
MGKKDEIAVAKVKIEQNGDIGEDKDEEKKGEKEPKMPMIGAIALFRFADGWDRLMIVLGT
IMAMVNGTVLPLMCIVFGDMTDSFIGDSIQTQNNFTNITFPVSNTTLGEEMTGHAIYYSI
MGAVVLVAAYMQVAFWTLAAGRQVKRLRKLFFHCIMQQEIGWFDVNETGELNTRLTDDIY
KINEGIGDKVGMLIQSFTTFVASFVIGFSKGWKLTLVILAVSPVLGFSAFIFSKVLTSFT
SLEQSAYAKAGAVAEEVISSVRTVFAFGGQQKEITRYEKNLEDAKNMGIRKAISANIAMG
FTFLMIYLSYALSFWYGSTLILSGEYTIGTVLTVFFTVLIGAFAMGQTSPNVQAFASARG
AAHKVYNIIDNKPHINSYSDHGHKPDVIKGNIEFNNIHFTYPSRPNVKVLNGMSLSVRSG
QTIALVGSSGCGKSTTVQLLQRFYDPQDGSVCVDGHDVRSLNVRFLREMIGVVSQEPILF
ATTIAENIRYGRPDVTHQEIEQAAREANAYDFIMTLPDKFETLVGDRGTQMSGGQKQRIA
IARALVRNPKILLLDEATSALDAESETIVQAALDKVRQGRTTIVVAHRLSTIRNADVIAG
FQKGEIVELGTHSQLMEKEGVYHTLVTMQTFKSPEEGEEAVEEQVLEEKSPSVTPFSETT
LIRRKSTKGSSFVGSEKGDKDKTEVEEEDEEIPPVSFLKVLKLNLPEWPYMVVGVICATI
NGGMQPFFAVIFSKIIAVFAEQDQELVRQRSSFYSIMFALIGVVSFITMFLQGFCFGKAG
EILTMKLRLMAFKAMMRQELGWYDSHKNSVGALTTRLATDAAQVQGATGVRLATLAQNVA
NLGTSLIISFVYGWQLTLLILCVVPVMAVAGGIQMKMLSGHAVKDKKELEQAGKIATEAI
ENIRTVASLTREQKFESLYQENLIVPYKNSQKKAHVYGITFSFSQAMIYFAYAGCFRFGA
WLIEEGIMTFENVFLVISAVLYGAMAVGEANSFTPNYAKAKISASHLMFLINREPAIDNC
SQEGETPDHFDGNVRFQGVRFNYPSRPDLAVLQGLELKVQKGQTLALVGSSGCGKSTTIQ
LLERFYDPLQGTVMLDNSDAKKLNIHWLRAQMGIVSQEPVLFDCSLAENIAYGDNTRKVT
MEEIQSAAKAANIHSFIDDLPQKYDTQAGDKGTQLSGGQKQRIAIARAILRNPKVLLLDE
ATSALDTESERVVQEALDVARQGRTCIVVAHRLSTIQNADLIAVFQKGVVVEQGTHQQLL
SQRGVYYSLVTTQLGHGRN
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaaggacgagatagctgtggccaaagtcaagattgagcaaaacggagacatt
ggagaggataaagatgaagagaaaaagggggagaaagagccaaagatgccgatgattggc
gccatagctctgttcaggtttgctgatggttgggacaggttgatgattgtgctggggacc
atcatggctatggttaatggaacggtcctccctctcatgtgtatcgtctttggggacatg
actgacagcttcataggagactccatacagacacagaataacttcaccaacatcacattc
cctgtttccaacaccactctgggagaggagatgacgggccatgctatctactactctata
atgggtgcggtggtgttggtagcagcctacatgcaggtggccttctggaccctggcggca
ggcaggcaggtcaaacgcctcaggaagctcttcttccactgcatcatgcagcaggagatc
ggctggttcgacgtcaacgagacgggagaactcaacacccgcctaacagatgacatctat
aagatcaacgaggggataggtgacaaggtgggcatgttgatccagtccttcaccaccttc
gttgcttccttcgtcatcggcttcagcaaaggatggaagctcacccttgtcatcctggct
gtcagccctgtgctgggcttctctgcttttatattcagcaaggtactgacgtccttcaca
tccctggagcagagtgcttatgctaaagctggagccgtggctgaggaggtgatctcttct
gtcagaacagtcttcgctttcggtggacaacagaaggagataaccaggtacgagaaaaac
ctggaggatgctaagaacatggggatccgtaaagccatctctgctaacatcgccatgggc
ttcaccttcctgatgatctatctgtcctacgctctgtccttctggtacggcagcacactc
atcctatctggagaatacaccattggaactgtcctcaccgtgttcttcacagtgttgatc
ggggcgtttgccatgggacagacttctcctaatgtccaggccttcgccagtgcccgggga
gcggcacacaaagtctacaacatcatcgacaataaaccccacatcaacagctactcagac
cacggccacaagcctgatgtcatcaaaggaaacatagagtttaacaacatccatttcacc
tacccctcacgacccaacgtcaaagtgttgaatggaatgtctctgagcgtgcgtagtggc
cagaccatagctctggtaggcagtagtggctgtgggaagagcaccaccgttcagctgctg
cagcggttctatgatccacaagatggatcagtgtgtgtagatggtcatgacgtgcgctcc
ctgaacgtgcgcttcctgagagagatgattggcgttgtcagtcaggagcccatcctgttt
gctaccaccatcgctgagaacatccgctacggacgacctgacgtcacacatcaggagata
gaacaggctgctagggaggccaacgcctacgacttcatcatgacactacctgataagttt
gagactctagttggagacagaggaacccagatgagtggaggacagaaacagaggatcgct
atcgcacgcgctctcgtacgcaaccccaagatcctcttgttggatgaggctacctcagcc
ctcgacgccgagagtgagaccatcgtacaggctgctttggacaaggtgagacagggtcgt
actaccatcgtggtggcccatcgtctgtctactatccgtaatgctgatgtcatcgcaggc
ttccagaagggagagattgtagagctgggaacacacagccaactgatggaaaaagaagga
gtctaccacacactggtcaccatgcagacgtttaagagtcctgaggagggcgaggaggct
gtggaggagcaggttctggaggagaagagtccgtcagtgacgccgttctcagagaccacc
ctcatcaggaggaaatctaccaagggatcgtccttcgtcggctcagagaaaggagacaag
gacaagactgaagtggaagaagaggatgaggagattcctcctgtgtcgtttctgaaggtg
ttgaagctgaaccttcctgagtggccctatatggtggttggtgtgatctgtgccactatc
aacgggggcatgcagcctttctttgctgtcatcttctctaaaatcatcgctgtgtttgca
gagcaagaccaggaactagttagacaacgctcctcgttctactctatcatgttcgccctc
attggagtcgtctccttcataaccatgttcctgcagggattctgttttgggaaggccggg
gagattctgaccatgaagctgagactgatggcctttaaagccatgatgagacaggagttg
ggctggtatgacagtcacaagaacagtgttggagctctcaccactagactggctacagat
gcagcacaagtacagggggctacaggagtgcgtttggccactctggcccagaacgtggct
aacctgggcaccagtctgatcatctcgtttgtgtacggctggcagctgactcttctcatc
ctgtgtgtggtacctgtcatggctgtagctggaggcatacagatgaagatgctctctggt
cacgctgtcaaagacaagaaagagctagaacaggctggcaagattgccacagaggccata
gagaacatccgtacggtggcatctctcaccagagagcagaagtttgagtctctgtaccag
gagaacctcatagtgccttacaagaactctcagaagaaggcccatgtgtatggcatcaca
ttctccttctctcaggccatgatctactttgcctatgcaggctgcttccgcttcggagcc
tggctcatagaggaaggcatcatgacctttgaaaatgtattcctggtgatctctgcagtg
ctgtacggagccatggcagtaggagaggccaactccttcacgcctaactatgccaaagcc
aagatatcagcatctcaccttatgttccttatcaacagagaacctgccatagacaactgc
tcacaggagggagaaacaccggaccactttgatggtaacgtgcgtttccagggagtgagg
ttcaactacccgtcccgtccagaccttgctgtcctgcagggactggagctgaaggtgcag
aagggccagactctagccctggtgggcagcagtggctgtgggaagagtacaaccatacaa
ttactggagaggttctacgacccactacagggcacagtgatgttggacaacagtgatgct
aagaagctgaacatccattggctgagggcccagatgggcatcgtatcccaggagcccgtg
ctgtttgactgtagtctggcagagaacatcgcctacggagacaacacacgcaaagttacc
atggaggagatccagagtgctgctaaagctgccaacatacacagcttcatagacgacctg
cctcagaagtatgacacccaagctggtgacaaggggacccagttgtcaggagggcagaag
cagcgtatagccattgcaagagccatcctccgcaaccccaaagtcctgctgctggatgag
gccacctccgcactggacacagagagcgagagggtggtgcaggaggccctggatgtggct
cgacagggcaggacgtgtatcgtggtggcccaccgcctttccaccattcagaacgctgac
ctgatcgctgtcttccagaagggagtggtggtggagcagggcactcatcaacaactactg
tcccagagaggagtatactactcactggtcaccacacagctgggccatggcagaaactga
DBGET
integrated database retrieval system
