Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420727
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Entry
139420727 CDS
T10872
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04310
Wnt signaling pathway
Brite
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139420727
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NCBI-GeneID:
139420727
NCBI-ProteinID:
XP_071027059
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Position
11:35724120..35726429
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AA seq
390 aa
AA seq
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MSSPDAGYASDDQTQARCAMSVMMPGMGHCQWADPLSPLGDTKVKSESCATSSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHSVSDHQSTSRVCMEGLGLGYHHEHG
YQVSTQSLGHYRDAQALGGASYEPYSLPTPDTSPLDAVESDSMFFTGHSQEECHMMPAYA
YHSQGAEYTPQDPQSNQHANHMLHRHLSSPTEQQQGHQAGPISPSFNQLAMYYSQHCSPS
HPKRHPGHGTGQRSPPPDSHPADQVEQMHPSELIGEVDRSEFEQYLNSSRPGDMTGLSYG
AHEANMQGPESLISSVLSDASTVFYCNYTS
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtccggatgcgggttacgccagtgacgatcagacccaggctaggtgcgcgatg
tcagtcatgatgcctggaatgggacactgtcagtgggcagaccccctgagccctctcggg
gacaccaaagtgaagagcgagtcctgcgctaccagctccgggaaccagaaccgtggaaag
actgagccgcggatccggcgacccatgaatgcgttcatggtgtgggcaaaggatgagcgc
aagcgcctggcacaacaaaatcctgacctgcacaatgcggagttgagcaaaatgttgggg
aagtcgtggaaagcccttcctgtgtccgagaagcgcccctttgtagaggaggctgaaagg
ctccgggtccagcacatgcaggaccaccctaactacaaataccgaccccggcggaggaag
caggtgaagaggattaagcgtctggactcagggttcctggttcatagtgtgtccgaccac
cagagcacctcccgagtgtgtatggagggcctggggctgggttaccaccacgagcatggc
taccaggtgtcgactcagtccctcggccactaccgcgacgcccaggccctcgggggggct
tcctacgaaccctacagcctgcccacccccgacacctccccactggatgccgtggaatca
gactccatgttcttcaccggccactctcaggaggagtgccacatgatgcctgcgtacgcc
taccactcccagggggcagagtacacgcctcaggaccctcagtccaaccagcacgccaac
cacatgctccacagacacctctcctcccccactgagcagcagcaaggccaccaggctggc
cccatctccccctccttcaaccaattggctatgtactacagccagcattgtagccccagt
caccccaagcgacacccaggacatgggacaggacagcgctcccctcccccagactcccac
ccagcggaccaggtggagcagatgcatccatcagagctgataggtgaggtggaccggagt
gagtttgaacagtacctgaactcctccagacctggggacatgacaggcctgtcttatggg
gcacatgaggccaacatgcagggacctgagagcctgatatcctctgtgctctctgatgcc
agcacagtgttctactgtaactacacctcctaa
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