Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420763
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Entry
139420763 CDS
T10872
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139420763
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139420763
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139420763
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
139420763
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
TPR_IFT122
Motif
Other DBs
NCBI-GeneID:
139420763
NCBI-ProteinID:
XP_071027086
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Position
2:9105308..9135211
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AA seq
497 aa
AA seq
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MEYEEPESPERITTEEPIKRGDTVSKKTHLTQIEVIPCKICGDKSSGVHYGVITCEGCKG
FFRRSQLPSVSYSCSRQSNCPIDRASRNRCQSCRLQKCVTQGMSRDAVKFGRMSKRQRES
LRAEVERHRQQQQQHLQAEAQPALPYPSKACRFRTPHLLQAPAPAYSFPGEPELPPCPTD
VLPYLVCSPGESQAPGLAYQGSCVSPGSGHSDERGFDSRQSSPDQTIGMGIRPFDPEDPY
CPYRPSLLHIEELCDSVVRSHRDTSQFRLEELQALRWKLFSREEIHAYQSKSVDEMWQHC
AVRLTEAVQYVVEFAKRIPGFRGLGQNDQITLLKTGSMEVVLVRMSRCFNTENSTVFFDG
KFGSTELFKSLGCGDLMVAVFDFAHSVCALRLTEQQMALFSSLVLINPDRPCLEDRSRVH
RMRRDLEVCLSHMLRRDNQESLQHKLYQKVSVLRSLCSLHVEKLHWFSQRYPLTVHSVFP
PLYKELFTSDLPSVDSL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggaatatgaggagcccgaatcacccgaacgcatcactacagaagaaccaatcaaaaga
ggagacactgtgtccaagaagactcatttgactcagattgaggtgattccctgtaagatc
tgtggtgataaatcatcaggagttcactatggagtcatcacctgcgagggctgcaagggt
tttttccggcgtagccagctgccgtccgtgtcctactcctgttccagacagagtaactgt
cctatagacagagccagccgcaaccgctgccagagctgccgactgcagaagtgtgtgacc
cagggcatgagccgggatgcggtgaagtttggtcggatgtcgaaacgtcagcgggagtct
ctgcgtgccgaggtggagagacaccgtcagcagcagcagcagcatctccaggcagaggcc
cagcccgccctgccctaccccagcaaggcatgccgtttccggacaccccacctgctccag
gccccggctccggcctactccttccctggagagccagagctgcccccctgcccgacagat
gtgctcccctacctggtgtgctccccaggcgagtcccaagctccaggtctggcctaccag
ggctcctgtgtgtctcctggtagtgggcactcagacgaaagagggttcgactcccgtcag
tcgtctcctgaccagacgatagggatgggaattagaccgtttgacccagaagacccctac
tgcccttaccgcccctccctgctacacatagaggagctgtgtgacagtgtcgtgcggtcc
catagggacaccagtcagttcagactagaggaactacaggctctgagatggaagttgttc
agcagagaggagatccatgcctaccagagcaagtcagtagatgagatgtggcagcactgt
gccgtgaggctgactgaagcggtacagtacgtggtggagtttgccaaacgcatcccaggg
ttccgtgggcttggacagaacgaccagatcaccctgctcaagactggatcgatggaggtg
gttctggttagaatgagcaggtgttttaacacagagaacagcaccgtcttcttcgatggg
aagtttggcagcactgaacttttcaagtctctgggctgtggtgatctgatggtggcggtg
tttgactttgctcacagtgtgtgtgccctgagactgactgagcagcagatggctctcttc
agctcactggtgctcattaaccccgatcgcccctgtcttgaggatagaagcagagtacat
agaatgagaagagacttggaggtatgcctcagtcacatgctacgcagagacaaccaggag
agtcttcagcacaagctctaccagaaggtgtcagtgttgcggtctctgtgcagtcttcat
gtggagaagctgcactggttcagccagcgctacccgctcaccgtccactctgtcttccct
cctctatacaaggagctgttcacctctgacctgccttctgtggactccctctga
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