Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420791
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Entry
139420791 CDS
T10872
Name
(RefSeq) interferon regulatory factor 1-like
KO
K09444
interferon regulatory factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
139420791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139420791
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
139420791
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
139420791
NCBI-ProteinID:
XP_071027165
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All DBs
Position
12:51991185..51995886
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AA seq
312 aa
AA seq
DB search
MPVSRMRMRPWLEEKIESNTISGLVWVDKDNKIFSIPWKHAARHGWDLNKDACLFKQWAM
HTGKFIQGETKPDPKTWKANFRCAMNSLPDIEEVKDKSINRGSGAVRVYKMKNVHSKPNN
KRSKANTVKKNNKGSQIKTEGMSYSETICPEDLNTNTHPQEDSMTQESIVDSTDNLDDFT
FAPECSTSVEIGPDSTNNFYTSFQVSPDHPTDYEDSHQETLIEMTQLWEQGSVNDKGFLS
NEVDTSESFDTAESYHSPESQWSDNSGAEIELRLYTELISGLPIIDDIHPYTDYWSLNNN
TSSYPQQITCPL
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgtctaggatgagaatgagaccttggttggaggaaaagattgagtccaacacc
atcagtggattggtgtgggtggacaaggacaataagattttctccatcccatggaagcat
gctgcacgtcatggatgggacttgaacaaggacgcatgtctgttcaagcaatgggccatg
cacacagggaaattcatacaaggcgagactaaaccggaccctaagacatggaaggctaat
ttccgctgtgcaatgaactcccttcctgacatagaggaagtgaaagacaaaagcatcaac
agagggagtggagcggtgcgtgtctacaagatgaagaacgtccactccaagccaaataac
aagaggtcaaaagcaaacactgtaaagaaaaataacaaggggtcacagatcaagacagag
ggaatgtcgtacagcgaaaccatttgccccgaggacctcaataccaacacacacccgcag
gaggacagtatgacacaggaaagcatagtagacagcacagacaacctagatgatttcaca
tttgccccagagtgttccaccagtgtggaaataggcccagacagcaccaacaacttctac
acatctttccaagtgtcaccagaccaccccacagactatgaagacagtcaccaagaaacc
cttattgagatgacacagctttgggagcaaggcagtgtaaacgacaaggggttcctgagc
aatgaagtagacacctcagagtccttcgacactgcagagtcttaccacagtccagagagc
caatggagtgataactcaggggcggaaatagagctgcggctgtacacagaactcatctca
ggactaccgatcattgacgacatccacccttacaccgactactggtcactgaacaacaac
acatccagttatccccaacagatcacatgcccactctga
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