Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420793
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Entry
139420793 CDS
T10872
Name
(RefSeq) PDZ and LIM domain protein 4-like
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139420793
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139420793
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
139420793
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Paralog
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GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
SNAPC3
PDZ_2
Motif
Other DBs
NCBI-GeneID:
139420793
NCBI-ProteinID:
XP_071027167
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Position
12:complement(52075965..52146129)
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AA seq
376 aa
AA seq
DB search
MPHTVTLNGPSPWGFRLVGGRDFSTPLTISRVTPGSKAAQGDLCPGDTILVINGDNTETM
THMEAQNRIKACIGELTLAICRSGDKVWSPNVIEDGKTSPYMATLESESPQNFRPISTGP
MTSGYSSSYSRGNNSSGYSRKPSYTPELPHLNNGTSKQSNHAQYNNPASLYAHNNGSNGD
RDRVLPKQMSGLSLGSPHSPEPPMRSPMGRNGNGHSFEVTTESDVYKMLQDTEEPVSAPK
QSGSFKYLQGILEAEDGGVSPTDMSGVRGLRSPDRSPVPKLGSPIPGHMGPMPGLQKLPQ
CTRCGNGIVGTIVKARDKLYHTECFMCDDCSMNLKQRGYFFIEENLYCETHAMARVQPPE
GYDVVAVYPNSKVELV
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgccacacaccgtgacattgaatggaccctcaccttggggttttcgactggtcggtgga
agggacttcagtacaccgttaactatttcgagggtgacaccgggcagtaaggcagcacag
ggggacctgtgtcctggagacaccatcctggtcatcaatggggacaacacagagaccatg
acacacatggaggcccagaacaggatcaaggcctgcattggggagctcacactggccatc
tgcaggtcaggagacaaagtctggtctccaaatgttattgaagatggcaagacaagtcca
tacatggccacattggagtctgagtcaccacagaatttccgacccattagcactggacca
atgaccagtggttacagtagcagctacagcagggggaacaacagcagcggttacagccga
aaaccctcctacactcccgagctgccgcacctcaacaacggtacctccaagcagtccaac
catgcgcagtacaacaacccagccagcctgtacgcacacaacaacggcagcaacggagac
agagacagggtcttgccaaaacaaatgagcggcctgagcctagggtctcctcacagccct
gagcctccgatgcgttctcctatggggcgtaatggaaacggtcatagttttgaagtcacc
acagagtcagatgtgtacaagatgctgcaagacacagaggagccagtctccgcacccaaa
caatccggctccttcaaatacctacaaggcatattggaggcagaggatggaggtgtgtcc
cctactgacatgtctggagtgagaggccttaggtccccggaccgatccccagtccctaaa
ctgggcagccccatccccggccacatgggccccatgcccggcctacagaaactcccccag
tgcacgcgctgtggcaacggcatagtgggaaccatcgtgaaggccagagacaaactgtac
cacacagagtgcttcatgtgtgatgactgcagcatgaacctcaagcagaggggctacttc
ttcatcgaggagaacttgtactgtgagacccacgccatggcccgcgtacagcctcctgag
ggatatgacgtggtcgccgtctaccccaactccaaggttgaactggtctga
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