Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420803
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Entry
139420803 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit gamma-2-like
KO
K05186
gamma-aminobutyric acid receptor subunit gamma
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139420803
04082 Neuroactive ligand signaling
139420803
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139420803
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139420803
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Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
PH_24
Motif
Other DBs
NCBI-GeneID:
139420803
NCBI-ProteinID:
XP_071027188
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Position
12:53104911..53179482
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AA seq
476 aa
AA seq
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MVIMAPTNVASKCSTAMANASFPVKLFLWVFLFAHLPTSSIQTENDDDEVTNKTWVLTPK
VYESDVTNILNSLLDGYDNKLRPDIGVKPTVIHTDMFVNSIGPVNAINMEYTIDIFFAQT
WYDRRLKFNSTMKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRILY
TLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPREEIVYKWKRSSVEVGDIRSWRLYQF
SFVGLRNTSEIVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDA
VPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALIEYGTLHYFV
SNRKPSTKKDKKNKNPLLRLFSSKTPTVDIRPRSATAIQMNNATHMQERDEEYGYECLDG
KDCTSFFCCFEDCRSGAWRHGRLHIRVAKIDSYARIGFPTAFGLFNLVYWISYLYL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggtgataatggctcctacaaatgtagcatctaaatgctcgacagcgatggcgaatgct
tctttccctgtgaagctatttctctgggtgtttttattcgctcatcttcctacaagctcc
atccagactgaaaacgacgatgatgaagtgacaaacaaaacttgggtgttgactcccaaa
gtgtacgagagcgatgtcaccaacatcctaaacagcctactagatggctacgataacaaa
ctgcgaccagatataggagtcaaaccaaccgtgatccacacggacatgtttgtgaacagt
atcggcccagtaaatgctatcaatatggagtacaccatcgacatcttttttgcccagacg
tggtatgaccggagattgaagttcaacagtaccatgaaggtcctgcgtctcaacagcaac
atggtgggcaagatctggatccccgacaccttctttcgcaactccaagaaggccgacgcc
cactggatcaccacgcccaatcgcatgcttcggatctggaacgatggacggatactctac
acactgcggttgactattgatgccgagtgccagcttaaactgaacaactttccaatggat
gagcactcctgtcccctggagttttcaagctatggctaccccagagaggagatagtgtac
aagtggaagaggagctccgtggaggtgggagacatccgctcctggaggctctaccagttc
tcctttgttggcctgaggaacacctccgagatcgtcaggaccgtgtcaggagactacgtt
gttctgacagtcttcttcgacctgagcaggaggatgggttacttcaccattcagacctat
atcccctgcaccctcatcgttgtcctctcctgggtctccttttggatcaacaaggatgct
gtacctgctagaacatccttaggcattaccactgtgctgaccatgactacgctgagtacc
atagccaggaagtcgctgcctaaggtatcctacgtgacggccatggacctctttgtgtcc
gtgtgcttcatctttgttttcgccgctctgatagagtatggaacactgcactactttgtg
agcaacaggaagccaagcacaaaaaaggacaagaaaaataaaaacccgctcctccggctc
ttttcctcaaagacacctacggtggacatacgccctcgctcagccaccgccatccagatg
aacaatgccacccacatgcaggagcgggatgaggagtatggctacgagtgcctagacggc
aaggactgcaccagcttcttctgctgtttcgaggactgccgctccggggcctggcggcac
gggcggttgcatatccgtgtcgccaagatagactcgtacgctcgcatcggtttccccacc
gctttcggtctctttaacctggtttactggatctcctatctctatctctag
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