Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139420818
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Entry
139420818 CDS
T10872
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03440
Homologous recombination
ocla03450
Non-homologous end-joining
ocla04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139420818
03450 Non-homologous end-joining
139420818
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
139420818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139420818
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139420818
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
139420818
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
139420818
BRCA1-C complex
139420818
NHEJ (non-homologous end-joining)
MRX complex
139420818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad50_zn_hook
SMC_N
AAA_21
AAA_23
SbcC_Walker_B
ABC_tran
AAA_29
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
139420818
NCBI-ProteinID:
XP_071027222
LinkDB
All DBs
Position
12:complement(54603485..54647676)
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AA seq
1313 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQVISFFNPLTVLVGPNGAGKTTIIECLKYVTAGEFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFTDLNGEKVAVQRSMQATQKGKKTEFRSLEGVITR
IKHGEKVSLSSKCAELDREMISALGVSKAVLDHVIFCHQEESNWPLGEGKPLKNKFDAIF
SATRYIKVLETLRQLRLKQSNEVRECQVELKFLKLNKEKALEIRELLASKETQLASSKDA
VQKIEGQIEPLENRLVDIDENLGKVMKLDNDIKALDSRKKQMEEDNQELEEKMEQVFQGS
DEQLQEMYQNHQRTVKEKEKRFTECQREMERAVRECQRLNRLKSDLLVEQGRLQLEADRH
AQNMKARDSQVRTLAAYLEMEGYDRSPFNDRQLQSFNRQVKERLDQETEAANQVMRDIQE
KEAMKQQSIDEIRDKKTGLERTMELKKDLQVKKQQELRNVKCDLQRLEGSSSRLQELETE
LTKAERELESAVQSSNVDGLKAEVLELQKDKAELDRTQRRLDREMETLNTHTTTRTQMDM
LKKDKTDKEDQVRKIKSRHSEDLVSLLGHFPKKRELEDWIHSKSKEINSTREKLAKLNKE
LASGEQNKSHITAEIRRKEQQLASYEEKMFNVCGSQDFQQDLGKLQDDLEKTSKQRAMLA
GATAVYTQFISQLTEEGEPCCPVCQRIFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERRKDDMMALKPVRQSIAELQEEELPELRNRLQNVNRDIERLKGDVEEQETLLSTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQQAAKLQGVDLSRTIQQVNQEKQETQHRLD
TTSSKMELKRKLIQDQQEQIQSLKSSMNETRAEKLQISSNMQKQQQLEEQCVEFTTEIQA
LHREIKEAKEQVSPLATTLEKLQQERLDLMERRKQRQEEGQEKINSIKDKVKSMAAFERE
ITGYTEEGKDDYKEQKEGELRETNTQVHEAEKQREKINKDSGNIRQDIDTQKVQERWLQD
NLTLRKRIEELKDVTKKREAVAKDMGSMQVLQLRNERRESDQRVDDLKKNRSVALGRQKG
FEEEIIRFRKELREDQYGKADERFRDRMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSGAGVKRRTYNYRVVMVKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELMGRSSYVEHFYRIRKNMDQCSEITKCSVSSLTSYLH
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaattgagaagatgagcatcctcggtgtgaggagctttggagtggaagacaaa
gacaaacaagtcatatcattctttaatcccttgactgtgttagtgggacccaatggtgct
ggtaaaacgactatcattgagtgtctgaagtatgtaacagctggtgaatttcccccagga
agcaaagggaatacatttgttcatgatccaaaggatgctcatgagactgacgtgcgagct
cagatccgactgcagttcaccgatctaaatggagagaaggtggcagttcaaaggtccatg
caggcaacacagaagggcaagaagactgagttcagaagtctggagggggtcatcaccagg
atcaagcatggagagaaggtgagcctgagctccaaatgtgcagagctggacagagagatg
atctcagccctgggtgtgtccaaagctgtcctcgaccatgtcatcttttgtcaccaagag
gagtccaactggcccctgggagaagggaagcccctcaagaacaaatttgatgctatcttc
tcagccacaaggtacatcaaggtgctggagacgctgaggcagctgaggctcaagcagtct
aacgaggtgagagagtgccaggtggagctgaagttcctgaaactgaacaaggagaaagcc
ctcgagatcagggagctgcttgccagcaaggagacccagctggcctcctccaaagatgcc
gtacagaagatagagggccagatcgaacccctggagaaccgactggttgacattgatgag
aatctgggaaaagtgatgaaactcgacaacgacatcaaggctttagacagcaggaagaag
cagatggaggaagacaaccaggaactggaggagaaaatggagcaggtgttccagggctca
gatgagcagctgcaggagatgtaccaaaatcaccagaggacagtgaaggagaaggagaag
aggtttacagagtgccagagggagatggaacgagccgtgagagagtgccagagactcaac
cgcctcaagtccgaccttctagttgaacaaggtcgtctccagctggaggctgatcgccat
gcccagaacatgaaggctcgtgactcccaggtgagaaccctggcagcctatctggagatg
gagggctacgaccggtcccccttcaatgacagacagctgcagagcttcaaccgccaggtc
aaagaaagactcgaccaggagactgaggccgccaaccaggtcatgagggatatacaagag
aaggaggccatgaagcagcagagcatcgatgagatacgagacaaaaagactggtctggag
aggaccatggagctgaagaaagacctgcaggttaagaagcagcaggagctgaggaacgtc
aagtgtgacctacagagactggagggctcctcctcccgactgcaggaactggagacagag
ctcaccaaagcggagcgtgagctggagagcgcggtgcagagctccaatgtggatgggctg
aaggccgaggtgctggagctccagaaggacaaagctgagctggaccgcacacagcgtcgg
ctggaccgtgaaatggagacccttaacacacacaccaccacacgcacacagatggacatg
ctcaagaaggataagacagataaagaagatcaggtgaggaagatcaagtcaaggcacagt
gaggatctggtgtccctgctgggtcacttccctaagaagagggagctggaggactggatc
cactccaagtccaaagagatcaactctaccagggagaaactagccaagctcaataaggag
ctggcgtcgggggagcagaataagagccacatcacagcagagatcaggaggaaggagcag
cagctggccagctatgaggaaaagatgttcaacgtgtgtggcagtcaggacttccagcag
gacctgggcaagctgcaggacgacttggagaagacctccaagcagagagccatgctggcg
ggagccacagccgtgtacactcagttcatcagtcagctgacagaggagggcgagccctgt
tgccccgtgtgccagcgcatcttcccctcggaggctgagctccaggacgtcatcaacgac
atgcagtccaagctgcgcctggtccctgacaagctgaagaacacagagcaggacctgaag
aggaaagagaggaggaaggacgacatgatggctctcaaacctgtcaggcagtctattgct
gagctgcaggaggaggagcttcctgagctgaggaaccggctgcagaacgtgaaccgggac
attgagaggctgaagggggatgtggaggagcaggagaccctgctgtccactctgatgtca
gaggaggacacagccaaggcctgcctgcaggacatctccctcatggacagataccagctg
gacctgaaggatgtggagaggaagatagcccagcaagctgccaagctgcagggagtggac
ctgagccgcaccattcagcaggtcaaccaggagaaacaggagacccagcatcgcctggac
acaacgtccagcaagatggagctgaagcgtaaactgatccaggaccagcaggagcagatc
cagagcctgaagagcagcatgaacgagacccgggcggagaagctacagatctccagtaac
atgcagaagcagcagcagctggaggagcagtgtgtggagttcaccactgagattcaggct
ctgcacagagagatcaaggaagctaaggagcaggtgtcccctctggccaccaccctggag
aagctgcagcaggagaggctggatttgatggagcgcaggaagcagaggcaggaggaggga
caagagaagataaatagcatcaaagacaaagttaaaagcatggccgcctttgaaagagag
attaccggatacacagaagagggcaaggatgattacaaagagcaaaaagagggggagctc
cgagagaccaacactcaggtccatgaggcagagaagcaacgggagaagattaacaaagac
agtggaaacatcaggcaagacatagacactcagaaggtccaagagcgttggctgcaggac
aacctgacgttgaggaagcgcatcgaggagctgaaggacgtgaccaagaaacgagaggct
gtggcgaaggatatggggagcatgcaggtcctgcagctacgcaatgagcgcagggagtct
gatcagcgcgtggacgacctgaagaagaaccgcagcgtagcattgggccgacagaagggc
ttcgaggaggagatcatccgcttccgcaaggagctccgcgaggaccagtacggcaaggct
gacgaacgctttcgggacaggatgatcgtcatgaggaccacagagctggccaacaaggac
ctggacatctactacaaggccctagaccaaaccataatgaagtttcacagtatgaagatg
gaggagatcaacaaaatcatccgggacctctggcgcagcacataccgaggacaagacatt
gagtatgtggagatccgctctgatgtggatgagaattcttccggggcgggagtgaagagg
aggacctataactaccgtgtggtgatggtgaagggagacacggcgctggacatgaggggt
cgctgcagtgccggccagaaggtcctggcctccctcatcatccgtctggctctggctgag
accttctgtctgaactgtggtatcctggccctggacgagcccacaaccaacctagacagg
gagaacatcgagtccctcgcacacgcccttgtggaaatcatcaagagccgctcacgccag
cgcaacttccagctgctcatcatcacccatgacgaggactttgtggagctcatgggacgc
tccagctacgtggaacacttctaccgtatcaggaagaacatggaccagtgctctgagatc
accaagtgcagtgtctcctccctcacctcctacctgcactga
DBGET
integrated database retrieval system
