KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139421018
Entry
139421018         CDS       T10872                                 
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040  Spliceosome
Brite
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     139421018
Spliceosome [BR:ocla03041]
 Complex B
  Other components
   Prp19-related factors
    139421018
 Complex C
    139421018
SSDB
Other DBs
NCBI-GeneID: 139421018
NCBI-ProteinID: XP_071027591
LinkDB
Position
12:complement(64170744..64184166)
AA seq 851 aa
MPSLNGKPDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGVKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVAQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCSKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMGLDDMKLLEQQAQLLAAEAEQ
DKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDGDEDQGPEEVQLEQKSVPT
AVFGGLKEGED
NT seq 2556 nt   +upstreamnt  +downstreamnt
atgccctctctaaatgggaaaccggacgtcatgtttgaggaagatgacctgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgctacatcgagttcaaa
cagaatggcgtcaagtccgtcctcaacatgatctatgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcacggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatctggctggactactgccagttcctggtggctcagtgtaag
atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctacccctgcctgagaccgcc
atccgtgtctatcgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcagcaagctcgatgaagcagcagtgcgactggcagccgttgtcaac
gatgagagctttgtgtccaaggagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggcaatcatccgt
ggaggcctcactcgtttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccattttgacg
gtggtgactgtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagatggggaaagatgaagaagaggacata
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctcagacagaacccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctggacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggggagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgacgtgtcagagccggtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtacgaccgcatcatagacctgcgcatagccacgccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaagcgctggat
ggctgtccagccaagtttgccaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcatgccatggcggtgtacgaaagagccacacaggcagtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagctatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgtctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggacga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acatggaaggagtttgagatccgccatgggaacgaagacactatccgggaaatgctgagg
atcaagcgtagcgtccaggccacgtataacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccggcaccatctcagatcttgccccgggccagatgggg
ctggatgatatgaagctgttggagcagcaggcccaactgctggccgccgaggctgaacag
gacaaacccaaactcaaagagaagatcctcttcgtcaggagtgacacgtcacgcagcgag
ctggctgaactggccaaacaagccaaccctgatgagattgatattgatgatgaggatgag
gatggtgatgaagaccagggccctgaggaggtgcagctggaacagaagagcgtccccacc
gctgtctttggagggctgaaagaaggagaagattga

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